Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24895 | 3' | -58.8 | NC_005284.1 | + | 113 | 0.67 | 0.455652 |
Target: 5'- cGCUCGCGCgCcGUCuucGCCGCGUGa- -3' miRNA: 3'- aCGAGCGUG-GuCAGcu-CGGUGCGCag -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 446 | 0.66 | 0.52631 |
Target: 5'- gGCUCGaC-CCGG-CGAGCCggcaGCGCcugGUCg -3' miRNA: 3'- aCGAGC-GuGGUCaGCUCGG----UGCG---CAG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 5259 | 0.68 | 0.407528 |
Target: 5'- cGCUCGCGCUugcuGUCGAaccugauGCCGuCGUGcUCg -3' miRNA: 3'- aCGAGCGUGGu---CAGCU-------CGGU-GCGC-AG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 5956 | 1.1 | 0.000367 |
Target: 5'- gUGCUCGCACCAGUCGAGCCACGCGUCg -3' miRNA: 3'- -ACGAGCGUGGUCAGCUCGGUGCGCAG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 6829 | 0.68 | 0.417639 |
Target: 5'- gGCgauUCGCACCgAGUUG-GCgCGCGCGaUCg -3' miRNA: 3'- aCG---AGCGUGG-UCAGCuCG-GUGCGC-AG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 8131 | 0.7 | 0.293756 |
Target: 5'- cGCUUGCcguucGCC-GUCuuGCCGCGUGUCg -3' miRNA: 3'- aCGAGCG-----UGGuCAGcuCGGUGCGCAG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 8453 | 0.67 | 0.465444 |
Target: 5'- aGCUCG-ACguGUUGcAGUCGgGCGUCg -3' miRNA: 3'- aCGAGCgUGguCAGC-UCGGUgCGCAG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 11168 | 0.72 | 0.211232 |
Target: 5'- aGCUCGCGCCg--CGGccGCCGCGCG-Cg -3' miRNA: 3'- aCGAGCGUGGucaGCU--CGGUGCGCaG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 12277 | 0.65 | 0.53571 |
Target: 5'- gGUcCGCGCCGcagugguGUCGcAGCCGgGCGUg -3' miRNA: 3'- aCGaGCGUGGU-------CAGC-UCGGUgCGCAg -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 13183 | 0.71 | 0.272704 |
Target: 5'- aGCUCGCACuCGG-CGcGGCCucgcGCGCGUa -3' miRNA: 3'- aCGAGCGUG-GUCaGC-UCGG----UGCGCAg -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 15106 | 0.66 | 0.495454 |
Target: 5'- cGCggCGCGCUuGUCGAGCaccuguuGCGCGa- -3' miRNA: 3'- aCGa-GCGUGGuCAGCUCGg------UGCGCag -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 16926 | 0.79 | 0.072583 |
Target: 5'- cGCUCGCAUCGGaUCGAgcuGCCGCGCG-Ca -3' miRNA: 3'- aCGAGCGUGGUC-AGCU---CGGUGCGCaG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 17745 | 0.68 | 0.408441 |
Target: 5'- cGCaggCGCACCGGcUCGGGCgCugGCu-- -3' miRNA: 3'- aCGa--GCGUGGUC-AGCUCG-GugCGcag -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 19324 | 0.69 | 0.364407 |
Target: 5'- cUGCUCGCACCGcgCGAGauCCAgCGCGa- -3' miRNA: 3'- -ACGAGCGUGGUcaGCUC--GGU-GCGCag -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 21247 | 0.66 | 0.511814 |
Target: 5'- aGCUCGCGgCggcggugAGcuucgccuacaacaUCGGGCCGCGCGcCu -3' miRNA: 3'- aCGAGCGUgG-------UC--------------AGCUCGGUGCGCaG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 21766 | 0.7 | 0.308483 |
Target: 5'- cGCUgGCACUgAG-CG-GCUGCGCGUCg -3' miRNA: 3'- aCGAgCGUGG-UCaGCuCGGUGCGCAG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 22917 | 0.71 | 0.257397 |
Target: 5'- aUGCggCGCAgCCAGUCGGGCUguucugaucgauugGCGCG-Cg -3' miRNA: 3'- -ACGa-GCGU-GGUCAGCUCGG--------------UGCGCaG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 25045 | 0.69 | 0.364407 |
Target: 5'- cGCUCGCGCCGGugcuguUCGGcGCCcCGaCGUg -3' miRNA: 3'- aCGAGCGUGGUC------AGCU-CGGuGC-GCAg -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 30745 | 0.66 | 0.53048 |
Target: 5'- cGCcUGCcagauugauccagcgGCCGGguaggCGAGCCAUGCGaUCg -3' miRNA: 3'- aCGaGCG---------------UGGUCa----GCUCGGUGCGC-AG- -5' |
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24895 | 3' | -58.8 | NC_005284.1 | + | 31241 | 0.68 | 0.381622 |
Target: 5'- cGCuUCGUcagcaacaACCAGUCGAGgUuugGCGUGUCg -3' miRNA: 3'- aCG-AGCG--------UGGUCAGCUCgG---UGCGCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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