miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 3' -51.5 NC_005284.1 + 54675 0.66 0.907599
Target:  5'- aCGCGGCGAagacgGCGCGcGAGCGGuugCGg -3'
miRNA:   3'- -GCGUUGCUga---CGCGUcCUUGCUua-GU- -5'
24896 3' -51.5 NC_005284.1 + 23044 0.66 0.907599
Target:  5'- gCGCAgaGCGcuaucGCUGgcUGCGGGAGCGAG-CAu -3'
miRNA:   3'- -GCGU--UGC-----UGAC--GCGUCCUUGCUUaGU- -5'
24896 3' -51.5 NC_005284.1 + 9358 0.66 0.903487
Target:  5'- aGCGACGGgcgcgagcgcgaggcUUGCGCAGGGgaucACGuacGUCGc -3'
miRNA:   3'- gCGUUGCU---------------GACGCGUCCU----UGCu--UAGU- -5'
24896 3' -51.5 NC_005284.1 + 46044 0.66 0.900689
Target:  5'- uGCGGCGGCuUGUGCGuauucGCGGAUCGa -3'
miRNA:   3'- gCGUUGCUG-ACGCGUccu--UGCUUAGU- -5'
24896 3' -51.5 NC_005284.1 + 34002 0.66 0.898561
Target:  5'- uGCGGCGAgggccgauuCUGCGCguucgaggcggucgAGGAGCGcaagGAUCGu -3'
miRNA:   3'- gCGUUGCU---------GACGCG--------------UCCUUGC----UUAGU- -5'
24896 3' -51.5 NC_005284.1 + 9499 0.66 0.886024
Target:  5'- gGCGGCGACaGCGUGGGucggcgcccGGCGAGcgcUCGu -3'
miRNA:   3'- gCGUUGCUGaCGCGUCC---------UUGCUU---AGU- -5'
24896 3' -51.5 NC_005284.1 + 11845 0.66 0.886024
Target:  5'- aGCAGCGGCUcGCguuGCAGGccgacuGGCGcGUCGg -3'
miRNA:   3'- gCGUUGCUGA-CG---CGUCC------UUGCuUAGU- -5'
24896 3' -51.5 NC_005284.1 + 9933 0.66 0.886024
Target:  5'- aGCAGCGGCguacgGCGCuugAGGcggcAGCGAAgCAa -3'
miRNA:   3'- gCGUUGCUGa----CGCG---UCC----UUGCUUaGU- -5'
24896 3' -51.5 NC_005284.1 + 21326 0.66 0.886024
Target:  5'- uGCgGGCGACUG-GCGGGGcGCGuGUCGc -3'
miRNA:   3'- gCG-UUGCUGACgCGUCCU-UGCuUAGU- -5'
24896 3' -51.5 NC_005284.1 + 11396 0.66 0.886024
Target:  5'- gCGCcuCGACaGCGCGGGAcuugacgcgcuGCGucGAUCGc -3'
miRNA:   3'- -GCGuuGCUGaCGCGUCCU-----------UGC--UUAGU- -5'
24896 3' -51.5 NC_005284.1 + 6676 0.66 0.878278
Target:  5'- gGCGACGGCcgGCGUacGGGuccgGACGAAgggCAa -3'
miRNA:   3'- gCGUUGCUGa-CGCG--UCC----UUGCUUa--GU- -5'
24896 3' -51.5 NC_005284.1 + 16746 0.66 0.878278
Target:  5'- aCGCAACuGACUGCGguGcGcguGCGcuUCGg -3'
miRNA:   3'- -GCGUUG-CUGACGCguC-Cu--UGCuuAGU- -5'
24896 3' -51.5 NC_005284.1 + 13995 0.67 0.861988
Target:  5'- gGC-GCGGCUGCGCGGuaAGCGGggCGu -3'
miRNA:   3'- gCGuUGCUGACGCGUCc-UUGCUuaGU- -5'
24896 3' -51.5 NC_005284.1 + 8648 0.67 0.853459
Target:  5'- gCGCGACGGCggGCGCAc-AGCGGAUg- -3'
miRNA:   3'- -GCGUUGCUGa-CGCGUccUUGCUUAgu -5'
24896 3' -51.5 NC_005284.1 + 32796 0.67 0.835676
Target:  5'- uGCGuCGGcCUGCGCGGGuuGCGGggCGg -3'
miRNA:   3'- gCGUuGCU-GACGCGUCCu-UGCUuaGU- -5'
24896 3' -51.5 NC_005284.1 + 32579 0.67 0.826441
Target:  5'- uGCuuCGGaaaGCGCGGGAugauguggucaGCGAGUCGa -3'
miRNA:   3'- gCGuuGCUga-CGCGUCCU-----------UGCUUAGU- -5'
24896 3' -51.5 NC_005284.1 + 26397 0.68 0.81699
Target:  5'- gGCAGCGugGCUGCGCcgcuucgagguGGGcgacGACGAAUUg -3'
miRNA:   3'- gCGUUGC--UGACGCG-----------UCC----UUGCUUAGu -5'
24896 3' -51.5 NC_005284.1 + 30427 0.68 0.81699
Target:  5'- gCGCGACGGCgagGUGCuGuuucGCGAGUCGc -3'
miRNA:   3'- -GCGUUGCUGa--CGCGuCcu--UGCUUAGU- -5'
24896 3' -51.5 NC_005284.1 + 43952 0.68 0.807334
Target:  5'- gGCGACGAgaGCuuGCGGGAGCaGAAg-- -3'
miRNA:   3'- gCGUUGCUgaCG--CGUCCUUG-CUUagu -5'
24896 3' -51.5 NC_005284.1 + 10645 0.68 0.797484
Target:  5'- gGCGGCGaagcGCUGCGCgAGGAACuGGUg- -3'
miRNA:   3'- gCGUUGC----UGACGCG-UCCUUGcUUAgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.