miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 16302 0.66 0.53571
Target:  5'- gGGCGAGCcgguGCCGCucgucaucgGCGaaauGGUCGUCGg -3'
miRNA:   3'- -CCGCUUG----CGGCGca-------CGCg---CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 30449 0.66 0.53571
Target:  5'- cGCGAGuCGCCGauuCGUGUGC---UGCCGg -3'
miRNA:   3'- cCGCUU-GCGGC---GCACGCGcuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 35508 0.66 0.529598
Target:  5'- aGCGAAacgaaGCCGUcgaagagcgauucccGUGuCGCGGUCGCg- -3'
miRNA:   3'- cCGCUUg----CGGCG---------------CAC-GCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 44074 0.66 0.525539
Target:  5'- cGGCGAGUGCCuGCGcGCcuuucugcgaaGCGAggccCGCCGu -3'
miRNA:   3'- -CCGCUUGCGG-CGCaCG-----------CGCUa---GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47287 0.66 0.525539
Target:  5'- cGGCcguCGCCGCGUgaucaacgcGCGCGA--GCUGa -3'
miRNA:   3'- -CCGcuuGCGGCGCA---------CGCGCUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45652 0.66 0.525539
Target:  5'- uGGCGGcuCGUCG-GUGCGCGAggCGgUGg -3'
miRNA:   3'- -CCGCUu-GCGGCgCACGCGCUa-GCgGC- -5'
24896 5' -59.8 NC_005284.1 + 5894 0.66 0.525539
Target:  5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3'
miRNA:   3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44549 0.66 0.525539
Target:  5'- cGCGGcagccccaaGCGCCacCGUGCccaCGGUCGCCa -3'
miRNA:   3'- cCGCU---------UGCGGc-GCACGc--GCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 12357 0.66 0.515441
Target:  5'- cGCGAuuCGCCGCGgGUGgGcUCGuuGg -3'
miRNA:   3'- cCGCUu-GCGGCGCaCGCgCuAGCggC- -5'
24896 5' -59.8 NC_005284.1 + 4782 0.66 0.515441
Target:  5'- aGCGGuACGUCGUGggGCGCGA--GCCu -3'
miRNA:   3'- cCGCU-UGCGGCGCa-CGCGCUagCGGc -5'
24896 5' -59.8 NC_005284.1 + 48762 0.66 0.50942
Target:  5'- cGGCGuGCGCCGCGaguUGCguugcauggcgaacuGCGAUCaaucgagcuGCCc -3'
miRNA:   3'- -CCGCuUGCGGCGC---ACG---------------CGCUAG---------CGGc -5'
24896 5' -59.8 NC_005284.1 + 12265 0.66 0.505423
Target:  5'- cGGCGAguucgugguccGCGCCGCaGUG-GUGucgcaGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGGCG-CACgCGCuag--CGGC- -5'
24896 5' -59.8 NC_005284.1 + 54678 0.66 0.505423
Target:  5'- cGGCGAagACGgCGCGcGaGCGGUUGCgGu -3'
miRNA:   3'- -CCGCU--UGCgGCGCaCgCGCUAGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 42737 0.66 0.505423
Target:  5'- uGGUGGAuucucCGCCGCGaucauuacgUGgGCGAUUGCg- -3'
miRNA:   3'- -CCGCUU-----GCGGCGC---------ACgCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 47792 0.66 0.505423
Target:  5'- cGGCGAGCGCCaUGU-CGaGcgCGCCa -3'
miRNA:   3'- -CCGCUUGCGGcGCAcGCgCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 19108 0.66 0.502434
Target:  5'- uGCuGAACGCCGCgGUGCagaaggagacgauuGCGcgUGUCGa -3'
miRNA:   3'- cCG-CUUGCGGCG-CACG--------------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 36551 0.66 0.500446
Target:  5'- uGGCGGAacgaucgugaucgGCCGUugcugaaucuGUGCGCcgucgucGAUCGCCGc -3'
miRNA:   3'- -CCGCUUg------------CGGCG----------CACGCG-------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 42110 0.66 0.49549
Target:  5'- cGCGGccCGCUGgGUGUaGCcGUCGCCGa -3'
miRNA:   3'- cCGCUu-GCGGCgCACG-CGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 24419 0.66 0.49549
Target:  5'- gGGcCGAGCGCauCGCccucGCGCucGAUCGCCu -3'
miRNA:   3'- -CC-GCUUGCG--GCGca--CGCG--CUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 46768 0.66 0.492527
Target:  5'- -aCGAACaGCCGCGcauucgccugcaugUGCGCG-UCGUCa -3'
miRNA:   3'- ccGCUUG-CGGCGC--------------ACGCGCuAGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.