miRNA display CGI


Results 21 - 40 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 19108 0.66 0.502434
Target:  5'- uGCuGAACGCCGCgGUGCagaaggagacgauuGCGcgUGUCGa -3'
miRNA:   3'- cCG-CUUGCGGCG-CACG--------------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 6828 0.66 0.485646
Target:  5'- gGGCGAuuCGCaccgaguugGCGcGCGCGAUCGaUCGu -3'
miRNA:   3'- -CCGCUu-GCGg--------CGCaCGCGCUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 36856 0.67 0.475896
Target:  5'- cGGCGAuugucgGCGCCuuGUcgaGCGUGAuccuuUCGCCa -3'
miRNA:   3'- -CCGCU------UGCGGcgCA---CGCGCU-----AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 7900 0.67 0.475896
Target:  5'- uGCGAACGCCGgGUu--CaAUCGCCGg -3'
miRNA:   3'- cCGCUUGCGGCgCAcgcGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45896 0.67 0.475896
Target:  5'- aGCGGuUGCCGUGgucgcGCGCGAUgCGCa- -3'
miRNA:   3'- cCGCUuGCGGCGCa----CGCGCUA-GCGgc -5'
24896 5' -59.8 NC_005284.1 + 17793 0.67 0.466244
Target:  5'- aGGCGAACGCCGCGaagGuCG-GAaucagUGUCGa -3'
miRNA:   3'- -CCGCUUGCGGCGCa--C-GCgCUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 23353 0.67 0.456695
Target:  5'- cGGC--GCGCCGCagcgGCGCacGUCGCCc -3'
miRNA:   3'- -CCGcuUGCGGCGca--CGCGc-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 39700 0.67 0.455746
Target:  5'- cGCGGauacucuGCGagCGCGUGCGCcucaAUCGCCu -3'
miRNA:   3'- cCGCU-------UGCg-GCGCACGCGc---UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45970 0.67 0.447252
Target:  5'- uGGCGcAGCGUgGCGUGgacgaguggauUGCGucAUUGCCGg -3'
miRNA:   3'- -CCGC-UUGCGgCGCAC-----------GCGC--UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 16192 0.67 0.475896
Target:  5'- -aUGAccuacuCGCCGCGUGCGC--UCgGCCGa -3'
miRNA:   3'- ccGCUu-----GCGGCGCACGCGcuAG-CGGC- -5'
24896 5' -59.8 NC_005284.1 + 33271 0.67 0.456695
Target:  5'- gGGCGAugcUGCCGCGcGUGCuucUUGCCa -3'
miRNA:   3'- -CCGCUu--GCGGCGCaCGCGcu-AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 21336 0.67 0.456695
Target:  5'- uGGCGGG-GCgCGUGUcGCGCGAUCaacgaGUCGg -3'
miRNA:   3'- -CCGCUUgCG-GCGCA-CGCGCUAG-----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 24722 0.67 0.456695
Target:  5'- gGGCGAaacgACGCC-CGUGCGUcuUCgGCCc -3'
miRNA:   3'- -CCGCU----UGCGGcGCACGCGcuAG-CGGc -5'
24896 5' -59.8 NC_005284.1 + 31338 0.67 0.456695
Target:  5'- cGGCGAGCGaCGCGcagaacacGCGCugucGGUgGCCGu -3'
miRNA:   3'- -CCGCUUGCgGCGCa-------CGCG----CUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 33854 0.67 0.475896
Target:  5'- -uCGAGCGCUuuGUGUGUGUcGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG--CGCACGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 34004 0.67 0.466244
Target:  5'- cGGCGAGgGCCGauucUGCGCGuUCGaggCGg -3'
miRNA:   3'- -CCGCUUgCGGCgc--ACGCGCuAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 21666 0.67 0.475896
Target:  5'- -aCGAugcCGCCGCGUcgGCGGUgGCCGc -3'
miRNA:   3'- ccGCUu--GCGGCGCAcgCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50343 0.67 0.475896
Target:  5'- cGGCGAACcgugcuuuCUGCGUGUGCcGGgugugUGCCGu -3'
miRNA:   3'- -CCGCUUGc-------GGCGCACGCG-CUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7794 0.67 0.456695
Target:  5'- aGGCGuGACGagcCUGCGUGCaGCGGU-GCUGa -3'
miRNA:   3'- -CCGC-UUGC---GGCGCACG-CGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 14940 0.67 0.456695
Target:  5'- uGCGAACGUCGauuugGCGUGAauaacgcgCGCCGu -3'
miRNA:   3'- cCGCUUGCGGCgca--CGCGCUa-------GCGGC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.