miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 45429 0.73 0.195466
Target:  5'- cGGCGAcgauauuCGCgGCGU-CGCGAUUGUCGg -3'
miRNA:   3'- -CCGCUu------GCGgCGCAcGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 25528 0.73 0.20572
Target:  5'- aGCGGcCGUCGuCGUGCGCGcGUCGCUc -3'
miRNA:   3'- cCGCUuGCGGC-GCACGCGC-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 44703 0.72 0.239302
Target:  5'- --aGAccCGCCGCG-GuCGCGGUCGCCGc -3'
miRNA:   3'- ccgCUu-GCGGCGCaC-GCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 715 0.72 0.233403
Target:  5'- --aGAugGCCGCGU-CGUGAUCGuuGu -3'
miRNA:   3'- ccgCUugCGGCGCAcGCGCUAGCggC- -5'
24896 5' -59.8 NC_005284.1 + 21832 0.72 0.211019
Target:  5'- cGGCGcuuccAGCGCCgccgGCGUGgGCGAUggUGCCGc -3'
miRNA:   3'- -CCGC-----UUGCGG----CGCACgCGCUA--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50118 0.72 0.216436
Target:  5'- cGGCGAucGCGCaCGCG-GCGU--UCGCCa -3'
miRNA:   3'- -CCGCU--UGCG-GCGCaCGCGcuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 9768 0.72 0.238706
Target:  5'- aGGCGAcggcgcaagcucACGUCGCaacgGCGCGcgccaacGUCGCCGg -3'
miRNA:   3'- -CCGCU------------UGCGGCGca--CGCGC-------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 8575 0.72 0.241696
Target:  5'- cGGCGAauacgaccgaauacgAcCGCCGCaUGCGCGGUCucucgucgacgGCCGg -3'
miRNA:   3'- -CCGCU---------------U-GCGGCGcACGCGCUAG-----------CGGC- -5'
24896 5' -59.8 NC_005284.1 + 22746 0.72 0.235748
Target:  5'- uGGcCGAGCgGCUGCGgucgaucaaggggcGCGCGAUCGUCa -3'
miRNA:   3'- -CC-GCUUG-CGGCGCa-------------CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 46127 0.71 0.276672
Target:  5'- aGGCaAACGCCGCauccgcuGUGCGCc--CGCCGu -3'
miRNA:   3'- -CCGcUUGCGGCG-------CACGCGcuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 9213 0.71 0.257749
Target:  5'- aGGCGucgauaGCCGaGUGCGCGGgcgacgCGCCa -3'
miRNA:   3'- -CCGCuug---CGGCgCACGCGCUa-----GCGGc -5'
24896 5' -59.8 NC_005284.1 + 45546 0.71 0.245325
Target:  5'- cGCGcucuaugcCGCCGCGUgGCGCG-UCGCCc -3'
miRNA:   3'- cCGCuu------GCGGCGCA-CGCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 32128 0.71 0.270683
Target:  5'- aGGCGcACGCUGC-UGCGCGcgauuccaaGUUGCCu -3'
miRNA:   3'- -CCGCuUGCGGCGcACGCGC---------UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 27859 0.71 0.277344
Target:  5'- -aCGAcGCGCCGCccgGCGC-AUCGCCGa -3'
miRNA:   3'- ccGCU-UGCGGCGca-CGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 22024 0.7 0.290358
Target:  5'- gGGCGAccgGCG-UGCGUGCGggaacacgcaugcCGGUCGCCu -3'
miRNA:   3'- -CCGCU---UGCgGCGCACGC-------------GCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 48425 0.7 0.320058
Target:  5'- uGCGAAgacgcgccaauCGCCGCGUGCaGUGcaguaccagcuUCGCCGg -3'
miRNA:   3'- cCGCUU-----------GCGGCGCACG-CGCu----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 15936 0.7 0.312609
Target:  5'- cGGCGuuccuGACGUCG-GcGCGCGA-CGCCGg -3'
miRNA:   3'- -CCGC-----UUGCGGCgCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 30406 0.7 0.305293
Target:  5'- cGGCaugucGAuCGuCCGCGUGCGCGA-CGgCGa -3'
miRNA:   3'- -CCG-----CUuGC-GGCGCACGCGCUaGCgGC- -5'
24896 5' -59.8 NC_005284.1 + 5952 0.7 0.305293
Target:  5'- uGCGGACGCCaCGgcugGCGCcgauccGAUCGUCGc -3'
miRNA:   3'- cCGCUUGCGGcGCa---CGCG------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45071 0.7 0.305293
Target:  5'- gGGCGAGCGCgGCuacGCGCucgugaaGUUGCCGa -3'
miRNA:   3'- -CCGCUUGCGgCGca-CGCGc------UAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.