miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 38946 0.69 0.359279
Target:  5'- cGGCGAGCacuucGUCGaccuuCGUGCGCGAU-GCUGa -3'
miRNA:   3'- -CCGCUUG-----CGGC-----GCACGCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 36766 0.69 0.327639
Target:  5'- cGGCGAGCGugaCCGUGU-CGCcGUCGaCCGa -3'
miRNA:   3'- -CCGCUUGC---GGCGCAcGCGcUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 5454 0.68 0.401738
Target:  5'- cGGuCGucGCGCaCGCGUGcCGUGccaaccAUCGCCGu -3'
miRNA:   3'- -CC-GCu-UGCG-GCGCAC-GCGC------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50749 0.68 0.399102
Target:  5'- aGCGAugGCaaucCGcCGUGCGCGAUgaucgauuucaccgCGUCGa -3'
miRNA:   3'- cCGCUugCG----GC-GCACGCGCUA--------------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 38833 0.68 0.396477
Target:  5'- cGGCGAACgugagGCCgGCGUcGCGCGccgacgucaggaaCGCCGg -3'
miRNA:   3'- -CCGCUUG-----CGG-CGCA-CGCGCua-----------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7875 0.68 0.384375
Target:  5'- uGGCGAAaagaUCGCaGUGCGCGA--GCCGa -3'
miRNA:   3'- -CCGCUUgc--GGCG-CACGCGCUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48238 0.68 0.384375
Target:  5'- uGGCGcaaagacuGACGCUGaCG-GCGCG-UUGCCGu -3'
miRNA:   3'- -CCGC--------UUGCGGC-GCaCGCGCuAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 12012 0.68 0.410605
Target:  5'- cGGCGcGAgGuuGuUGUGCGUGGUCGCa- -3'
miRNA:   3'- -CCGC-UUgCggC-GCACGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 7074 0.68 0.410605
Target:  5'- cGGCcuucuGCGCaCGCGaGCGCGcgUGCCc -3'
miRNA:   3'- -CCGcu---UGCG-GCGCaCGCGCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 33117 0.68 0.392994
Target:  5'- cGGCGGccacCGCCGacgcggcggcauCGUGCGCGGcgaUCGCaCGc -3'
miRNA:   3'- -CCGCUu---GCGGC------------GCACGCGCU---AGCG-GC- -5'
24896 5' -59.8 NC_005284.1 + 26249 0.68 0.401738
Target:  5'- uGGCGAACguGCCGgGUaugacgugaagGCGCuccaaAUCGCCGc -3'
miRNA:   3'- -CCGCUUG--CGGCgCA-----------CGCGc----UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 42256 0.68 0.409713
Target:  5'- -aCGAGCGUUugggcgaGUGUGCGcCGGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG-------CGCACGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 26929 0.68 0.401738
Target:  5'- cGGCGAuGCGCCGgGcGgGCG-UCGUCu -3'
miRNA:   3'- -CCGCU-UGCGGCgCaCgCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 34792 0.68 0.392994
Target:  5'- aGCuu-CGCCGaccuCGUcauagGCGCGGUCGCCGa -3'
miRNA:   3'- cCGcuuGCGGC----GCA-----CGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44862 0.68 0.419592
Target:  5'- aGCGccguACGCCGCugcUGCGCGAgCGCg- -3'
miRNA:   3'- cCGCu---UGCGGCGc--ACGCGCUaGCGgc -5'
24896 5' -59.8 NC_005284.1 + 45970 0.67 0.447252
Target:  5'- uGGCGcAGCGUgGCGUGgacgaguggauUGCGucAUUGCCGg -3'
miRNA:   3'- -CCGC-UUGCGgCGCAC-----------GCGC--UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 34004 0.67 0.466244
Target:  5'- cGGCGAGgGCCGauucUGCGCGuUCGaggCGg -3'
miRNA:   3'- -CCGCUUgCGGCgc--ACGCGCuAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 33854 0.67 0.475896
Target:  5'- -uCGAGCGCUuuGUGUGUGUcGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG--CGCACGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 21666 0.67 0.475896
Target:  5'- -aCGAugcCGCCGCGUcgGCGGUgGCCGc -3'
miRNA:   3'- ccGCUu--GCGGCGCAcgCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50343 0.67 0.475896
Target:  5'- cGGCGAACcgugcuuuCUGCGUGUGCcGGgugugUGCCGu -3'
miRNA:   3'- -CCGCUUGc-------GGCGCACGCG-CUa----GCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.