miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 21336 0.67 0.456695
Target:  5'- uGGCGGG-GCgCGUGUcGCGCGAUCaacgaGUCGg -3'
miRNA:   3'- -CCGCUUgCG-GCGCA-CGCGCUAG-----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 14940 0.67 0.456695
Target:  5'- uGCGAACGUCGauuugGCGUGAauaacgcgCGCCGu -3'
miRNA:   3'- cCGCUUGCGGCgca--CGCGCUa-------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7794 0.67 0.456695
Target:  5'- aGGCGuGACGagcCUGCGUGCaGCGGU-GCUGa -3'
miRNA:   3'- -CCGC-UUGC---GGCGCACG-CGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45970 0.67 0.447252
Target:  5'- uGGCGcAGCGUgGCGUGgacgaguggauUGCGucAUUGCCGg -3'
miRNA:   3'- -CCGC-UUGCGgCGCAC-----------GCGC--UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 34004 0.67 0.466244
Target:  5'- cGGCGAGgGCCGauucUGCGCGuUCGaggCGg -3'
miRNA:   3'- -CCGCUUgCGGCgc--ACGCGCuAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 33854 0.67 0.475896
Target:  5'- -uCGAGCGCUuuGUGUGUGUcGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG--CGCACGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 27111 0.67 0.428698
Target:  5'- cGGCGAcccgcgcgccACGCCGgccCGUauaGCgGCGAUUGCCc -3'
miRNA:   3'- -CCGCU----------UGCGGC---GCA---CG-CGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 36856 0.67 0.475896
Target:  5'- cGGCGAuugucgGCGCCuuGUcgaGCGUGAuccuuUCGCCa -3'
miRNA:   3'- -CCGCU------UGCGGcgCA---CGCGCU-----AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 16192 0.67 0.475896
Target:  5'- -aUGAccuacuCGCCGCGUGCGC--UCgGCCGa -3'
miRNA:   3'- ccGCUu-----GCGGCGCACGCGcuAG-CGGC- -5'
24896 5' -59.8 NC_005284.1 + 45896 0.67 0.475896
Target:  5'- aGCGGuUGCCGUGgucgcGCGCGAUgCGCa- -3'
miRNA:   3'- cCGCUuGCGGCGCa----CGCGCUA-GCGgc -5'
24896 5' -59.8 NC_005284.1 + 21666 0.67 0.475896
Target:  5'- -aCGAugcCGCCGCGUcgGCGGUgGCCGc -3'
miRNA:   3'- ccGCUu--GCGGCGCAcgCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 17793 0.67 0.466244
Target:  5'- aGGCGAACGCCGCGaagGuCG-GAaucagUGUCGa -3'
miRNA:   3'- -CCGCUUGCGGCGCa--C-GCgCUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 23353 0.67 0.456695
Target:  5'- cGGC--GCGCCGCagcgGCGCacGUCGCCc -3'
miRNA:   3'- -CCGcuUGCGGCGca--CGCGc-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 39700 0.67 0.455746
Target:  5'- cGCGGauacucuGCGagCGCGUGCGCcucaAUCGCCu -3'
miRNA:   3'- cCGCU-------UGCg-GCGCACGCGc---UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 13772 0.67 0.447252
Target:  5'- cGUGAACGUCcuccGCGaCGAUCGCCGu -3'
miRNA:   3'- cCGCUUGCGGcgcaCGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47841 0.67 0.437919
Target:  5'- cGGCGccGGCGCCuucucCG-GUGCGA-CGCCGa -3'
miRNA:   3'- -CCGC--UUGCGGc----GCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 9079 0.67 0.428698
Target:  5'- cGCGAAgauguacaGCCGUGUcgacGCGCGGUCGUg- -3'
miRNA:   3'- cCGCUUg-------CGGCGCA----CGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 48028 0.67 0.428698
Target:  5'- cGGCuGAGCcuucauguGCUGCGUGC-CGAacUCGUCGa -3'
miRNA:   3'- -CCG-CUUG--------CGGCGCACGcGCU--AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47287 0.66 0.525539
Target:  5'- cGGCcguCGCCGCGUgaucaacgcGCGCGA--GCUGa -3'
miRNA:   3'- -CCGcuuGCGGCGCA---------CGCGCUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 35508 0.66 0.529598
Target:  5'- aGCGAAacgaaGCCGUcgaagagcgauucccGUGuCGCGGUCGCg- -3'
miRNA:   3'- cCGCUUg----CGGCG---------------CAC-GCGCUAGCGgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.