miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 4668 1.09 0.000434
Target:  5'- uGGCGAACGCCGCGUGCGCGAUCGCCGc -3'
miRNA:   3'- -CCGCUUGCGGCGCACGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 30924 0.85 0.027262
Target:  5'- gGGCGGGCGCCGUG-GCGCuuUCGCCGc -3'
miRNA:   3'- -CCGCUUGCGGCGCaCGCGcuAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44657 0.84 0.031395
Target:  5'- cGCGAGCGCCGUcUGCGCcGUCGCCGc -3'
miRNA:   3'- cCGCUUGCGGCGcACGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 37794 0.82 0.042774
Target:  5'- cGGCGAucguCGCCGUGUGCGCGuUCGgCGu -3'
miRNA:   3'- -CCGCUu---GCGGCGCACGCGCuAGCgGC- -5'
24896 5' -59.8 NC_005284.1 + 10670 0.81 0.049198
Target:  5'- uGGUGcGCGCCGCGgGCGCGAUCGacaCGg -3'
miRNA:   3'- -CCGCuUGCGGCGCaCGCGCUAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 17943 0.8 0.064979
Target:  5'- aGGCGGACGCgGCaaagcaaGUGCGAUCGCCa -3'
miRNA:   3'- -CCGCUUGCGgCGca-----CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 49322 0.77 0.095472
Target:  5'- cGGCGAugGUuggcacggcaCGCGUGCGCGA-CGaCCGa -3'
miRNA:   3'- -CCGCUugCG----------GCGCACGCGCUaGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 36827 0.77 0.106426
Target:  5'- cGGCaGAAuCGCCGUGaa-GCGAUCGCCGg -3'
miRNA:   3'- -CCG-CUU-GCGGCGCacgCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45228 0.76 0.113555
Target:  5'- uGGCGAGCGCUGCcUGCGCcgccucguguugcuuGAUCGUCu -3'
miRNA:   3'- -CCGCUUGCGGCGcACGCG---------------CUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 12639 0.76 0.115406
Target:  5'- cGGCGAuacgACGCUGCGUGUGCGcaaaGCCc -3'
miRNA:   3'- -CCGCU----UGCGGCGCACGCGCuag-CGGc -5'
24896 5' -59.8 NC_005284.1 + 31432 0.76 0.118553
Target:  5'- gGGCGAcguGCGCCGC-UGCG-GcgCGCCGg -3'
miRNA:   3'- -CCGCU---UGCGGCGcACGCgCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7688 0.76 0.12178
Target:  5'- cGGCG-ACGUacaGCGUGCGCGugagcggugCGCCGa -3'
miRNA:   3'- -CCGCuUGCGg--CGCACGCGCua-------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45181 0.75 0.132309
Target:  5'- cGCGuucugaagcuucgcCGCCGCGgcaGCGCGAUCGCCc -3'
miRNA:   3'- cCGCuu------------GCGGCGCa--CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 21631 0.75 0.13552
Target:  5'- cGCGcucGACGCCGagcaGcGUGCGAUCGCCGc -3'
miRNA:   3'- cCGC---UUGCGGCg---CaCGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 31001 0.75 0.146746
Target:  5'- uGGCGcuUGCCGcCGUGCGUGcggaaGUUGCCGg -3'
miRNA:   3'- -CCGCuuGCGGC-GCACGCGC-----UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 19010 0.74 0.17177
Target:  5'- uGGCGuGugGUCGCugcagGCgGCGAUCGCCGa -3'
miRNA:   3'- -CCGC-UugCGGCGca---CG-CGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47708 0.73 0.185662
Target:  5'- gGGCacgcGCGCuCGCGUGCGCaGAagGCCGu -3'
miRNA:   3'- -CCGcu--UGCG-GCGCACGCG-CUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 18068 0.73 0.190019
Target:  5'- uGGCGGGCGCUGUGUGgaugaucgaaagcCGCGAgcUCGCgGc -3'
miRNA:   3'- -CCGCUUGCGGCGCAC-------------GCGCU--AGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 17671 0.73 0.190509
Target:  5'- gGGCGucuaccuGCGCgCGauCGUGCGCGAcgcccugaaucUCGCCGg -3'
miRNA:   3'- -CCGCu------UGCG-GC--GCACGCGCU-----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 35771 0.73 0.190509
Target:  5'- cGGCGAuCGCCGCcUGCaGCGAccacaCGCCa -3'
miRNA:   3'- -CCGCUuGCGGCGcACG-CGCUa----GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.