miRNA display CGI


Results 41 - 60 of 120 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 45071 0.7 0.305293
Target:  5'- gGGCGAGCGCgGCuacGCGCucgugaaGUUGCCGa -3'
miRNA:   3'- -CCGCUUGCGgCGca-CGCGc------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5952 0.7 0.305293
Target:  5'- uGCGGACGCCaCGgcugGCGCcgauccGAUCGUCGc -3'
miRNA:   3'- cCGCUUGCGGcGCa---CGCG------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 30406 0.7 0.305293
Target:  5'- cGGCaugucGAuCGuCCGCGUGCGCGA-CGgCGa -3'
miRNA:   3'- -CCG-----CUuGC-GGCGCACGCGCUaGCgGC- -5'
24896 5' -59.8 NC_005284.1 + 29605 0.7 0.312609
Target:  5'- gGGCGAACcgGCaauGCGUGCGUaGUCGUCc -3'
miRNA:   3'- -CCGCUUG--CGg--CGCACGCGcUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45006 0.7 0.312609
Target:  5'- uGGCGcGCGCCguuGCGacgugagcuUGCGCcGUCGCCu -3'
miRNA:   3'- -CCGCuUGCGG---CGC---------ACGCGcUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 43623 0.7 0.312609
Target:  5'- cGCGGcgGCCGCG-GCGCGAgcugCGUCa -3'
miRNA:   3'- cCGCUugCGGCGCaCGCGCUa---GCGGc -5'
24896 5' -59.8 NC_005284.1 + 15936 0.7 0.312609
Target:  5'- cGGCGuuccuGACGUCG-GcGCGCGA-CGCCGg -3'
miRNA:   3'- -CCGC-----UUGCGGCgCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44941 0.7 0.320058
Target:  5'- aGCGAugauCGCCGCGUaggGCgugcccgugauGCGcgCGCCGa -3'
miRNA:   3'- cCGCUu---GCGGCGCA---CG-----------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48425 0.7 0.320058
Target:  5'- uGCGAAgacgcgccaauCGCCGCGUGCaGUGcaguaccagcuUCGCCGg -3'
miRNA:   3'- cCGCUU-----------GCGGCGCACG-CGCu----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46409 0.69 0.327639
Target:  5'- uGCGAcugaaACGCCGCcgcCGCGAucaUCGCCGc -3'
miRNA:   3'- cCGCU-----UGCGGCGcacGCGCU---AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 36766 0.69 0.327639
Target:  5'- cGGCGAGCGugaCCGUGU-CGCcGUCGaCCGa -3'
miRNA:   3'- -CCGCUUGC---GGCGCAcGCGcUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 53798 0.69 0.327639
Target:  5'- cGGCGAGCGCaucuuGCGUcauGCGCaGAUgauugCGCCa -3'
miRNA:   3'- -CCGCUUGCGg----CGCA---CGCG-CUA-----GCGGc -5'
24896 5' -59.8 NC_005284.1 + 17819 0.69 0.335351
Target:  5'- gGGCucgacgGGACGCUuuGUGCGCcgggacagguGAUCGCCGu -3'
miRNA:   3'- -CCG------CUUGCGGcgCACGCG----------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 15449 0.69 0.335351
Target:  5'- uGGCGugcACGaCUGCuacgcgaucGUGCGCGAcugguaucUCGCCGa -3'
miRNA:   3'- -CCGCu--UGC-GGCG---------CACGCGCU--------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 16973 0.69 0.340829
Target:  5'- cGCGuGCGCCgcaucacgccgaacGCGcacacgGCGaCGAUCGCCGa -3'
miRNA:   3'- cCGCuUGCGG--------------CGCa-----CGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 43443 0.69 0.343196
Target:  5'- uGCGAcCGCCucgacGCGcaguUGCGCGAUCcgcuGCCGg -3'
miRNA:   3'- cCGCUuGCGG-----CGC----ACGCGCUAG----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 5159 0.69 0.351172
Target:  5'- --gGAACGCCGCugacGCGCGAUCaGCUc -3'
miRNA:   3'- ccgCUUGCGGCGca--CGCGCUAG-CGGc -5'
24896 5' -59.8 NC_005284.1 + 38946 0.69 0.359279
Target:  5'- cGGCGAGCacuucGUCGaccuuCGUGCGCGAU-GCUGa -3'
miRNA:   3'- -CCGCUUG-----CGGC-----GCACGCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46064 0.69 0.359279
Target:  5'- cGCGGaucgaacugcGCGCCGCGUcgaGCGCGcgCaCCGu -3'
miRNA:   3'- cCGCU----------UGCGGCGCA---CGCGCuaGcGGC- -5'
24896 5' -59.8 NC_005284.1 + 45314 0.69 0.367516
Target:  5'- uGCGu-CGCCGCGacUGCG-GAUUGCCc -3'
miRNA:   3'- cCGCuuGCGGCGC--ACGCgCUAGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.