miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 46681 0.69 0.367516
Target:  5'- gGGcCGAACGCCGCcgcgacCGCGGUUGCa- -3'
miRNA:   3'- -CC-GCUUGCGGCGcac---GCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 32940 0.69 0.367516
Target:  5'- cGGCGGcaccaucgcccACGCCgGCG-GCGCuGGaagCGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGG-CGCaCGCG-CUa--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7875 0.68 0.384375
Target:  5'- uGGCGAAaagaUCGCaGUGCGCGA--GCCGa -3'
miRNA:   3'- -CCGCUUgc--GGCG-CACGCGCUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48238 0.68 0.384375
Target:  5'- uGGCGcaaagacuGACGCUGaCG-GCGCG-UUGCCGu -3'
miRNA:   3'- -CCGC--------UUGCGGC-GCaCGCGCuAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 34792 0.68 0.392994
Target:  5'- aGCuu-CGCCGaccuCGUcauagGCGCGGUCGCCGa -3'
miRNA:   3'- cCGcuuGCGGC----GCA-----CGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 33117 0.68 0.392994
Target:  5'- cGGCGGccacCGCCGacgcggcggcauCGUGCGCGGcgaUCGCaCGc -3'
miRNA:   3'- -CCGCUu---GCGGC------------GCACGCGCU---AGCG-GC- -5'
24896 5' -59.8 NC_005284.1 + 38833 0.68 0.396477
Target:  5'- cGGCGAACgugagGCCgGCGUcGCGCGccgacgucaggaaCGCCGg -3'
miRNA:   3'- -CCGCUUG-----CGG-CGCA-CGCGCua-----------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50749 0.68 0.399102
Target:  5'- aGCGAugGCaaucCGcCGUGCGCGAUgaucgauuucaccgCGUCGa -3'
miRNA:   3'- cCGCUugCG----GC-GCACGCGCUA--------------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5454 0.68 0.401738
Target:  5'- cGGuCGucGCGCaCGCGUGcCGUGccaaccAUCGCCGu -3'
miRNA:   3'- -CC-GCu-UGCG-GCGCAC-GCGC------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 26249 0.68 0.401738
Target:  5'- uGGCGAACguGCCGgGUaugacgugaagGCGCuccaaAUCGCCGc -3'
miRNA:   3'- -CCGCUUG--CGGCgCA-----------CGCGc----UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 26929 0.68 0.401738
Target:  5'- cGGCGAuGCGCCGgGcGgGCG-UCGUCu -3'
miRNA:   3'- -CCGCU-UGCGGCgCaCgCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 42256 0.68 0.409713
Target:  5'- -aCGAGCGUUugggcgaGUGUGCGcCGGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG-------CGCACGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7074 0.68 0.410605
Target:  5'- cGGCcuucuGCGCaCGCGaGCGCGcgUGCCc -3'
miRNA:   3'- -CCGcu---UGCG-GCGCaCGCGCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 12012 0.68 0.410605
Target:  5'- cGGCGcGAgGuuGuUGUGCGUGGUCGCa- -3'
miRNA:   3'- -CCGC-UUgCggC-GCACGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 44862 0.68 0.419592
Target:  5'- aGCGccguACGCCGCugcUGCGCGAgCGCg- -3'
miRNA:   3'- cCGCu---UGCGGCGc--ACGCGCUaGCGgc -5'
24896 5' -59.8 NC_005284.1 + 27111 0.67 0.428698
Target:  5'- cGGCGAcccgcgcgccACGCCGgccCGUauaGCgGCGAUUGCCc -3'
miRNA:   3'- -CCGCU----------UGCGGC---GCA---CG-CGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 9079 0.67 0.428698
Target:  5'- cGCGAAgauguacaGCCGUGUcgacGCGCGGUCGUg- -3'
miRNA:   3'- cCGCUUg-------CGGCGCA----CGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 48028 0.67 0.428698
Target:  5'- cGGCuGAGCcuucauguGCUGCGUGC-CGAacUCGUCGa -3'
miRNA:   3'- -CCG-CUUG--------CGGCGCACGcGCU--AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47841 0.67 0.437919
Target:  5'- cGGCGccGGCGCCuucucCG-GUGCGA-CGCCGa -3'
miRNA:   3'- -CCGC--UUGCGGc----GCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45970 0.67 0.447252
Target:  5'- uGGCGcAGCGUgGCGUGgacgaguggauUGCGucAUUGCCGg -3'
miRNA:   3'- -CCGC-UUGCGgCGCAC-----------GCGC--UAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.