Results 101 - 120 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24896 | 5' | -59.8 | NC_005284.1 | + | 46768 | 0.66 | 0.492527 |
Target: 5'- -aCGAACaGCCGCGcauucgccugcaugUGCGCG-UCGUCa -3' miRNA: 3'- ccGCUUG-CGGCGC--------------ACGCGCuAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 42110 | 0.66 | 0.49549 |
Target: 5'- cGCGGccCGCUGgGUGUaGCcGUCGCCGa -3' miRNA: 3'- cCGCUu-GCGGCgCACG-CGcUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 24419 | 0.66 | 0.49549 |
Target: 5'- gGGcCGAGCGCauCGCccucGCGCucGAUCGCCu -3' miRNA: 3'- -CC-GCUUGCG--GCGca--CGCG--CUAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 36551 | 0.66 | 0.500446 |
Target: 5'- uGGCGGAacgaucgugaucgGCCGUugcugaaucuGUGCGCcgucgucGAUCGCCGc -3' miRNA: 3'- -CCGCUUg------------CGGCG----------CACGCG-------CUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 19108 | 0.66 | 0.502434 |
Target: 5'- uGCuGAACGCCGCgGUGCagaaggagacgauuGCGcgUGUCGa -3' miRNA: 3'- cCG-CUUGCGGCG-CACG--------------CGCuaGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 12265 | 0.66 | 0.505423 |
Target: 5'- cGGCGAguucgugguccGCGCCGCaGUG-GUGucgcaGCCGg -3' miRNA: 3'- -CCGCU-----------UGCGGCG-CACgCGCuag--CGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 42737 | 0.66 | 0.505423 |
Target: 5'- uGGUGGAuucucCGCCGCGaucauuacgUGgGCGAUUGCg- -3' miRNA: 3'- -CCGCUU-----GCGGCGC---------ACgCGCUAGCGgc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 54678 | 0.66 | 0.505423 |
Target: 5'- cGGCGAagACGgCGCGcGaGCGGUUGCgGu -3' miRNA: 3'- -CCGCU--UGCgGCGCaCgCGCUAGCGgC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 47792 | 0.66 | 0.505423 |
Target: 5'- cGGCGAGCGCCaUGU-CGaGcgCGCCa -3' miRNA: 3'- -CCGCUUGCGGcGCAcGCgCuaGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 48762 | 0.66 | 0.50942 |
Target: 5'- cGGCGuGCGCCGCGaguUGCguugcauggcgaacuGCGAUCaaucgagcuGCCc -3' miRNA: 3'- -CCGCuUGCGGCGC---ACG---------------CGCUAG---------CGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 12357 | 0.66 | 0.515441 |
Target: 5'- cGCGAuuCGCCGCGgGUGgGcUCGuuGg -3' miRNA: 3'- cCGCUu-GCGGCGCaCGCgCuAGCggC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 4782 | 0.66 | 0.515441 |
Target: 5'- aGCGGuACGUCGUGggGCGCGA--GCCu -3' miRNA: 3'- cCGCU-UGCGGCGCa-CGCGCUagCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 47287 | 0.66 | 0.525539 |
Target: 5'- cGGCcguCGCCGCGUgaucaacgcGCGCGA--GCUGa -3' miRNA: 3'- -CCGcuuGCGGCGCA---------CGCGCUagCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 45652 | 0.66 | 0.525539 |
Target: 5'- uGGCGGcuCGUCG-GUGCGCGAggCGgUGg -3' miRNA: 3'- -CCGCUu-GCGGCgCACGCGCUa-GCgGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 44549 | 0.66 | 0.525539 |
Target: 5'- cGCGGcagccccaaGCGCCacCGUGCccaCGGUCGCCa -3' miRNA: 3'- cCGCU---------UGCGGc-GCACGc--GCUAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 5894 | 0.66 | 0.525539 |
Target: 5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3' miRNA: 3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 44074 | 0.66 | 0.525539 |
Target: 5'- cGGCGAGUGCCuGCGcGCcuuucugcgaaGCGAggccCGCCGu -3' miRNA: 3'- -CCGCUUGCGG-CGCaCG-----------CGCUa---GCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 35508 | 0.66 | 0.529598 |
Target: 5'- aGCGAAacgaaGCCGUcgaagagcgauucccGUGuCGCGGUCGCg- -3' miRNA: 3'- cCGCUUg----CGGCG---------------CAC-GCGCUAGCGgc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 30449 | 0.66 | 0.53571 |
Target: 5'- cGCGAGuCGCCGauuCGUGUGC---UGCCGg -3' miRNA: 3'- cCGCUU-GCGGC---GCACGCGcuaGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 16302 | 0.66 | 0.53571 |
Target: 5'- gGGCGAGCcgguGCCGCucgucaucgGCGaaauGGUCGUCGg -3' miRNA: 3'- -CCGCUUG----CGGCGca-------CGCg---CUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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