Results 81 - 100 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24896 | 5' | -59.8 | NC_005284.1 | + | 8654 | 0.7 | 0.291056 |
Target: 5'- cGGCGGGCGCacaGCGgaUGCGgCGuUUGCCu -3' miRNA: 3'- -CCGCUUGCGg--CGC--ACGC-GCuAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 40278 | 0.7 | 0.291056 |
Target: 5'- cGGCGAugGCUGC-UGCGCG-UCGg-- -3' miRNA: 3'- -CCGCUugCGGCGcACGCGCuAGCggc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 22024 | 0.7 | 0.290358 |
Target: 5'- gGGCGAccgGCG-UGCGUGCGggaacacgcaugcCGGUCGCCu -3' miRNA: 3'- -CCGCU---UGCgGCGCACGC-------------GCUAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 27676 | 0.7 | 0.284134 |
Target: 5'- gGGCcGGCGUgGCGcGCG-GGUCGCCGc -3' miRNA: 3'- -CCGcUUGCGgCGCaCGCgCUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9433 | 0.7 | 0.284134 |
Target: 5'- cGGCGuguCGCuCGCGgccggGCG-GAUUGCCGu -3' miRNA: 3'- -CCGCuu-GCG-GCGCa----CGCgCUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 38999 | 0.7 | 0.284134 |
Target: 5'- uGGCG-ACGCaaCGCaUGCGCGAgUUGCCa -3' miRNA: 3'- -CCGCuUGCG--GCGcACGCGCU-AGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 27859 | 0.71 | 0.277344 |
Target: 5'- -aCGAcGCGCCGCccgGCGC-AUCGCCGa -3' miRNA: 3'- ccGCU-UGCGGCGca-CGCGcUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 46127 | 0.71 | 0.276672 |
Target: 5'- aGGCaAACGCCGCauccgcuGUGCGCc--CGCCGu -3' miRNA: 3'- -CCGcUUGCGGCG-------CACGCGcuaGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 32128 | 0.71 | 0.270683 |
Target: 5'- aGGCGcACGCUGC-UGCGCGcgauuccaaGUUGCCu -3' miRNA: 3'- -CCGCuUGCGGCGcACGCGC---------UAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9213 | 0.71 | 0.257749 |
Target: 5'- aGGCGucgauaGCCGaGUGCGCGGgcgacgCGCCa -3' miRNA: 3'- -CCGCuug---CGGCgCACGCGCUa-----GCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 45546 | 0.71 | 0.245325 |
Target: 5'- cGCGcucuaugcCGCCGCGUgGCGCG-UCGCCc -3' miRNA: 3'- cCGCuu------GCGGCGCA-CGCGCuAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 8575 | 0.72 | 0.241696 |
Target: 5'- cGGCGAauacgaccgaauacgAcCGCCGCaUGCGCGGUCucucgucgacgGCCGg -3' miRNA: 3'- -CCGCU---------------U-GCGGCGcACGCGCUAG-----------CGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 44703 | 0.72 | 0.239302 |
Target: 5'- --aGAccCGCCGCG-GuCGCGGUCGCCGc -3' miRNA: 3'- ccgCUu-GCGGCGCaC-GCGCUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9768 | 0.72 | 0.238706 |
Target: 5'- aGGCGAcggcgcaagcucACGUCGCaacgGCGCGcgccaacGUCGCCGg -3' miRNA: 3'- -CCGCU------------UGCGGCGca--CGCGC-------UAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 22746 | 0.72 | 0.235748 |
Target: 5'- uGGcCGAGCgGCUGCGgucgaucaaggggcGCGCGAUCGUCa -3' miRNA: 3'- -CC-GCUUG-CGGCGCa-------------CGCGCUAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 715 | 0.72 | 0.233403 |
Target: 5'- --aGAugGCCGCGU-CGUGAUCGuuGu -3' miRNA: 3'- ccgCUugCGGCGCAcGCGCUAGCggC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 50118 | 0.72 | 0.216436 |
Target: 5'- cGGCGAucGCGCaCGCG-GCGU--UCGCCa -3' miRNA: 3'- -CCGCU--UGCG-GCGCaCGCGcuAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 21832 | 0.72 | 0.211019 |
Target: 5'- cGGCGcuuccAGCGCCgccgGCGUGgGCGAUggUGCCGc -3' miRNA: 3'- -CCGC-----UUGCGG----CGCACgCGCUA--GCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 25528 | 0.73 | 0.20572 |
Target: 5'- aGCGGcCGUCGuCGUGCGCGcGUCGCUc -3' miRNA: 3'- cCGCUuGCGGC-GCACGCGC-UAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 45429 | 0.73 | 0.195466 |
Target: 5'- cGGCGAcgauauuCGCgGCGU-CGCGAUUGUCGg -3' miRNA: 3'- -CCGCUu------GCGgCGCAcGCGCUAGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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