miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 715 0.72 0.233403
Target:  5'- --aGAugGCCGCGU-CGUGAUCGuuGu -3'
miRNA:   3'- ccgCUugCGGCGCAcGCGCUAGCggC- -5'
24896 5' -59.8 NC_005284.1 + 4668 1.09 0.000434
Target:  5'- uGGCGAACGCCGCGUGCGCGAUCGCCGc -3'
miRNA:   3'- -CCGCUUGCGGCGCACGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 4782 0.66 0.515441
Target:  5'- aGCGGuACGUCGUGggGCGCGA--GCCu -3'
miRNA:   3'- cCGCU-UGCGGCGCa-CGCGCUagCGGc -5'
24896 5' -59.8 NC_005284.1 + 5159 0.69 0.351172
Target:  5'- --gGAACGCCGCugacGCGCGAUCaGCUc -3'
miRNA:   3'- ccgCUUGCGGCGca--CGCGCUAG-CGGc -5'
24896 5' -59.8 NC_005284.1 + 5454 0.68 0.401738
Target:  5'- cGGuCGucGCGCaCGCGUGcCGUGccaaccAUCGCCGu -3'
miRNA:   3'- -CC-GCu-UGCG-GCGCAC-GCGC------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5894 0.66 0.525539
Target:  5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3'
miRNA:   3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5952 0.7 0.305293
Target:  5'- uGCGGACGCCaCGgcugGCGCcgauccGAUCGUCGc -3'
miRNA:   3'- cCGCUUGCGGcGCa---CGCG------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 6828 0.66 0.485646
Target:  5'- gGGCGAuuCGCaccgaguugGCGcGCGCGAUCGaUCGu -3'
miRNA:   3'- -CCGCUu-GCGg--------CGCaCGCGCUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 7074 0.68 0.410605
Target:  5'- cGGCcuucuGCGCaCGCGaGCGCGcgUGCCc -3'
miRNA:   3'- -CCGcu---UGCG-GCGCaCGCGCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 7688 0.76 0.12178
Target:  5'- cGGCG-ACGUacaGCGUGCGCGugagcggugCGCCGa -3'
miRNA:   3'- -CCGCuUGCGg--CGCACGCGCua-------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7794 0.67 0.456695
Target:  5'- aGGCGuGACGagcCUGCGUGCaGCGGU-GCUGa -3'
miRNA:   3'- -CCGC-UUGC---GGCGCACG-CGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7875 0.68 0.384375
Target:  5'- uGGCGAAaagaUCGCaGUGCGCGA--GCCGa -3'
miRNA:   3'- -CCGCUUgc--GGCG-CACGCGCUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7900 0.67 0.475896
Target:  5'- uGCGAACGCCGgGUu--CaAUCGCCGg -3'
miRNA:   3'- cCGCUUGCGGCgCAcgcGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 8575 0.72 0.241696
Target:  5'- cGGCGAauacgaccgaauacgAcCGCCGCaUGCGCGGUCucucgucgacgGCCGg -3'
miRNA:   3'- -CCGCU---------------U-GCGGCGcACGCGCUAG-----------CGGC- -5'
24896 5' -59.8 NC_005284.1 + 8654 0.7 0.291056
Target:  5'- cGGCGGGCGCacaGCGgaUGCGgCGuUUGCCu -3'
miRNA:   3'- -CCGCUUGCGg--CGC--ACGC-GCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 9079 0.67 0.428698
Target:  5'- cGCGAAgauguacaGCCGUGUcgacGCGCGGUCGUg- -3'
miRNA:   3'- cCGCUUg-------CGGCGCA----CGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 9213 0.71 0.257749
Target:  5'- aGGCGucgauaGCCGaGUGCGCGGgcgacgCGCCa -3'
miRNA:   3'- -CCGCuug---CGGCgCACGCGCUa-----GCGGc -5'
24896 5' -59.8 NC_005284.1 + 9433 0.7 0.284134
Target:  5'- cGGCGuguCGCuCGCGgccggGCG-GAUUGCCGu -3'
miRNA:   3'- -CCGCuu-GCG-GCGCa----CGCgCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 9768 0.72 0.238706
Target:  5'- aGGCGAcggcgcaagcucACGUCGCaacgGCGCGcgccaacGUCGCCGg -3'
miRNA:   3'- -CCGCU------------UGCGGCGca--CGCGC-------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 10670 0.81 0.049198
Target:  5'- uGGUGcGCGCCGCGgGCGCGAUCGacaCGg -3'
miRNA:   3'- -CCGCuUGCGGCGCaCGCGCUAGCg--GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.