miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 12012 0.68 0.410605
Target:  5'- cGGCGcGAgGuuGuUGUGCGUGGUCGCa- -3'
miRNA:   3'- -CCGC-UUgCggC-GCACGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 12265 0.66 0.505423
Target:  5'- cGGCGAguucgugguccGCGCCGCaGUG-GUGucgcaGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGGCG-CACgCGCuag--CGGC- -5'
24896 5' -59.8 NC_005284.1 + 12357 0.66 0.515441
Target:  5'- cGCGAuuCGCCGCGgGUGgGcUCGuuGg -3'
miRNA:   3'- cCGCUu-GCGGCGCaCGCgCuAGCggC- -5'
24896 5' -59.8 NC_005284.1 + 12639 0.76 0.115406
Target:  5'- cGGCGAuacgACGCUGCGUGUGCGcaaaGCCc -3'
miRNA:   3'- -CCGCU----UGCGGCGCACGCGCuag-CGGc -5'
24896 5' -59.8 NC_005284.1 + 13772 0.67 0.447252
Target:  5'- cGUGAACGUCcuccGCGaCGAUCGCCGu -3'
miRNA:   3'- cCGCUUGCGGcgcaCGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 14940 0.67 0.456695
Target:  5'- uGCGAACGUCGauuugGCGUGAauaacgcgCGCCGu -3'
miRNA:   3'- cCGCUUGCGGCgca--CGCGCUa-------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 15449 0.69 0.335351
Target:  5'- uGGCGugcACGaCUGCuacgcgaucGUGCGCGAcugguaucUCGCCGa -3'
miRNA:   3'- -CCGCu--UGC-GGCG---------CACGCGCU--------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 15936 0.7 0.312609
Target:  5'- cGGCGuuccuGACGUCG-GcGCGCGA-CGCCGg -3'
miRNA:   3'- -CCGC-----UUGCGGCgCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 16192 0.67 0.475896
Target:  5'- -aUGAccuacuCGCCGCGUGCGC--UCgGCCGa -3'
miRNA:   3'- ccGCUu-----GCGGCGCACGCGcuAG-CGGC- -5'
24896 5' -59.8 NC_005284.1 + 16302 0.66 0.53571
Target:  5'- gGGCGAGCcgguGCCGCucgucaucgGCGaaauGGUCGUCGg -3'
miRNA:   3'- -CCGCUUG----CGGCGca-------CGCg---CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 16973 0.69 0.340829
Target:  5'- cGCGuGCGCCgcaucacgccgaacGCGcacacgGCGaCGAUCGCCGa -3'
miRNA:   3'- cCGCuUGCGG--------------CGCa-----CGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 17671 0.73 0.190509
Target:  5'- gGGCGucuaccuGCGCgCGauCGUGCGCGAcgcccugaaucUCGCCGg -3'
miRNA:   3'- -CCGCu------UGCG-GC--GCACGCGCU-----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 17793 0.67 0.466244
Target:  5'- aGGCGAACGCCGCGaagGuCG-GAaucagUGUCGa -3'
miRNA:   3'- -CCGCUUGCGGCGCa--C-GCgCUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 17819 0.69 0.335351
Target:  5'- gGGCucgacgGGACGCUuuGUGCGCcgggacagguGAUCGCCGu -3'
miRNA:   3'- -CCG------CUUGCGGcgCACGCG----------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 17943 0.8 0.064979
Target:  5'- aGGCGGACGCgGCaaagcaaGUGCGAUCGCCa -3'
miRNA:   3'- -CCGCUUGCGgCGca-----CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 18068 0.73 0.190019
Target:  5'- uGGCGGGCGCUGUGUGgaugaucgaaagcCGCGAgcUCGCgGc -3'
miRNA:   3'- -CCGCUUGCGGCGCAC-------------GCGCU--AGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 19010 0.74 0.17177
Target:  5'- uGGCGuGugGUCGCugcagGCgGCGAUCGCCGa -3'
miRNA:   3'- -CCGC-UugCGGCGca---CG-CGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 19108 0.66 0.502434
Target:  5'- uGCuGAACGCCGCgGUGCagaaggagacgauuGCGcgUGUCGa -3'
miRNA:   3'- cCG-CUUGCGGCG-CACG--------------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 21336 0.67 0.456695
Target:  5'- uGGCGGG-GCgCGUGUcGCGCGAUCaacgaGUCGg -3'
miRNA:   3'- -CCGCUUgCG-GCGCA-CGCGCUAG-----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 21631 0.75 0.13552
Target:  5'- cGCGcucGACGCCGagcaGcGUGCGAUCGCCGc -3'
miRNA:   3'- cCGC---UUGCGGCg---CaCGCGCUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.