miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 21666 0.67 0.475896
Target:  5'- -aCGAugcCGCCGCGUcgGCGGUgGCCGc -3'
miRNA:   3'- ccGCUu--GCGGCGCAcgCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 21832 0.72 0.211019
Target:  5'- cGGCGcuuccAGCGCCgccgGCGUGgGCGAUggUGCCGc -3'
miRNA:   3'- -CCGC-----UUGCGG----CGCACgCGCUA--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 22024 0.7 0.290358
Target:  5'- gGGCGAccgGCG-UGCGUGCGggaacacgcaugcCGGUCGCCu -3'
miRNA:   3'- -CCGCU---UGCgGCGCACGC-------------GCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 22746 0.72 0.235748
Target:  5'- uGGcCGAGCgGCUGCGgucgaucaaggggcGCGCGAUCGUCa -3'
miRNA:   3'- -CC-GCUUG-CGGCGCa-------------CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 23353 0.67 0.456695
Target:  5'- cGGC--GCGCCGCagcgGCGCacGUCGCCc -3'
miRNA:   3'- -CCGcuUGCGGCGca--CGCGc-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 24419 0.66 0.49549
Target:  5'- gGGcCGAGCGCauCGCccucGCGCucGAUCGCCu -3'
miRNA:   3'- -CC-GCUUGCG--GCGca--CGCG--CUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 24722 0.67 0.456695
Target:  5'- gGGCGAaacgACGCC-CGUGCGUcuUCgGCCc -3'
miRNA:   3'- -CCGCU----UGCGGcGCACGCGcuAG-CGGc -5'
24896 5' -59.8 NC_005284.1 + 25528 0.73 0.20572
Target:  5'- aGCGGcCGUCGuCGUGCGCGcGUCGCUc -3'
miRNA:   3'- cCGCUuGCGGC-GCACGCGC-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 26249 0.68 0.401738
Target:  5'- uGGCGAACguGCCGgGUaugacgugaagGCGCuccaaAUCGCCGc -3'
miRNA:   3'- -CCGCUUG--CGGCgCA-----------CGCGc----UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 26929 0.68 0.401738
Target:  5'- cGGCGAuGCGCCGgGcGgGCG-UCGUCu -3'
miRNA:   3'- -CCGCU-UGCGGCgCaCgCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 27111 0.67 0.428698
Target:  5'- cGGCGAcccgcgcgccACGCCGgccCGUauaGCgGCGAUUGCCc -3'
miRNA:   3'- -CCGCU----------UGCGGC---GCA---CG-CGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 27676 0.7 0.284134
Target:  5'- gGGCcGGCGUgGCGcGCG-GGUCGCCGc -3'
miRNA:   3'- -CCGcUUGCGgCGCaCGCgCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 27859 0.71 0.277344
Target:  5'- -aCGAcGCGCCGCccgGCGC-AUCGCCGa -3'
miRNA:   3'- ccGCU-UGCGGCGca-CGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 29605 0.7 0.312609
Target:  5'- gGGCGAACcgGCaauGCGUGCGUaGUCGUCc -3'
miRNA:   3'- -CCGCUUG--CGg--CGCACGCGcUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 30406 0.7 0.305293
Target:  5'- cGGCaugucGAuCGuCCGCGUGCGCGA-CGgCGa -3'
miRNA:   3'- -CCG-----CUuGC-GGCGCACGCGCUaGCgGC- -5'
24896 5' -59.8 NC_005284.1 + 30449 0.66 0.53571
Target:  5'- cGCGAGuCGCCGauuCGUGUGC---UGCCGg -3'
miRNA:   3'- cCGCUU-GCGGC---GCACGCGcuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 30924 0.85 0.027262
Target:  5'- gGGCGGGCGCCGUG-GCGCuuUCGCCGc -3'
miRNA:   3'- -CCGCUUGCGGCGCaCGCGcuAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 31001 0.75 0.146746
Target:  5'- uGGCGcuUGCCGcCGUGCGUGcggaaGUUGCCGg -3'
miRNA:   3'- -CCGCuuGCGGC-GCACGCGC-----UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 31338 0.67 0.456695
Target:  5'- cGGCGAGCGaCGCGcagaacacGCGCugucGGUgGCCGu -3'
miRNA:   3'- -CCGCUUGCgGCGCa-------CGCG----CUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 31432 0.76 0.118553
Target:  5'- gGGCGAcguGCGCCGC-UGCG-GcgCGCCGg -3'
miRNA:   3'- -CCGCU---UGCGGCGcACGCgCuaGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.