miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 32128 0.71 0.270683
Target:  5'- aGGCGcACGCUGC-UGCGCGcgauuccaaGUUGCCu -3'
miRNA:   3'- -CCGCuUGCGGCGcACGCGC---------UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 32940 0.69 0.367516
Target:  5'- cGGCGGcaccaucgcccACGCCgGCG-GCGCuGGaagCGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGG-CGCaCGCG-CUa--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 33117 0.68 0.392994
Target:  5'- cGGCGGccacCGCCGacgcggcggcauCGUGCGCGGcgaUCGCaCGc -3'
miRNA:   3'- -CCGCUu---GCGGC------------GCACGCGCU---AGCG-GC- -5'
24896 5' -59.8 NC_005284.1 + 33271 0.67 0.456695
Target:  5'- gGGCGAugcUGCCGCGcGUGCuucUUGCCa -3'
miRNA:   3'- -CCGCUu--GCGGCGCaCGCGcu-AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 33854 0.67 0.475896
Target:  5'- -uCGAGCGCUuuGUGUGUGUcGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG--CGCACGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 34004 0.67 0.466244
Target:  5'- cGGCGAGgGCCGauucUGCGCGuUCGaggCGg -3'
miRNA:   3'- -CCGCUUgCGGCgc--ACGCGCuAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 34792 0.68 0.392994
Target:  5'- aGCuu-CGCCGaccuCGUcauagGCGCGGUCGCCGa -3'
miRNA:   3'- cCGcuuGCGGC----GCA-----CGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 35508 0.66 0.529598
Target:  5'- aGCGAAacgaaGCCGUcgaagagcgauucccGUGuCGCGGUCGCg- -3'
miRNA:   3'- cCGCUUg----CGGCG---------------CAC-GCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 35771 0.73 0.190509
Target:  5'- cGGCGAuCGCCGCcUGCaGCGAccacaCGCCa -3'
miRNA:   3'- -CCGCUuGCGGCGcACG-CGCUa----GCGGc -5'
24896 5' -59.8 NC_005284.1 + 36551 0.66 0.500446
Target:  5'- uGGCGGAacgaucgugaucgGCCGUugcugaaucuGUGCGCcgucgucGAUCGCCGc -3'
miRNA:   3'- -CCGCUUg------------CGGCG----------CACGCG-------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 36766 0.69 0.327639
Target:  5'- cGGCGAGCGugaCCGUGU-CGCcGUCGaCCGa -3'
miRNA:   3'- -CCGCUUGC---GGCGCAcGCGcUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 36827 0.77 0.106426
Target:  5'- cGGCaGAAuCGCCGUGaa-GCGAUCGCCGg -3'
miRNA:   3'- -CCG-CUU-GCGGCGCacgCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 36856 0.67 0.475896
Target:  5'- cGGCGAuugucgGCGCCuuGUcgaGCGUGAuccuuUCGCCa -3'
miRNA:   3'- -CCGCU------UGCGGcgCA---CGCGCU-----AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 37794 0.82 0.042774
Target:  5'- cGGCGAucguCGCCGUGUGCGCGuUCGgCGu -3'
miRNA:   3'- -CCGCUu---GCGGCGCACGCGCuAGCgGC- -5'
24896 5' -59.8 NC_005284.1 + 38833 0.68 0.396477
Target:  5'- cGGCGAACgugagGCCgGCGUcGCGCGccgacgucaggaaCGCCGg -3'
miRNA:   3'- -CCGCUUG-----CGG-CGCA-CGCGCua-----------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 38946 0.69 0.359279
Target:  5'- cGGCGAGCacuucGUCGaccuuCGUGCGCGAU-GCUGa -3'
miRNA:   3'- -CCGCUUG-----CGGC-----GCACGCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 38999 0.7 0.284134
Target:  5'- uGGCG-ACGCaaCGCaUGCGCGAgUUGCCa -3'
miRNA:   3'- -CCGCuUGCG--GCGcACGCGCU-AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 39700 0.67 0.455746
Target:  5'- cGCGGauacucuGCGagCGCGUGCGCcucaAUCGCCu -3'
miRNA:   3'- cCGCU-------UGCg-GCGCACGCGc---UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 40278 0.7 0.291056
Target:  5'- cGGCGAugGCUGC-UGCGCG-UCGg-- -3'
miRNA:   3'- -CCGCUugCGGCGcACGCGCuAGCggc -5'
24896 5' -59.8 NC_005284.1 + 42110 0.66 0.49549
Target:  5'- cGCGGccCGCUGgGUGUaGCcGUCGCCGa -3'
miRNA:   3'- cCGCUu-GCGGCgCACG-CGcUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.