miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 54678 0.66 0.505423
Target:  5'- cGGCGAagACGgCGCGcGaGCGGUUGCgGu -3'
miRNA:   3'- -CCGCU--UGCgGCGCaCgCGCUAGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 53798 0.69 0.327639
Target:  5'- cGGCGAGCGCaucuuGCGUcauGCGCaGAUgauugCGCCa -3'
miRNA:   3'- -CCGCUUGCGg----CGCA---CGCG-CUA-----GCGGc -5'
24896 5' -59.8 NC_005284.1 + 50749 0.68 0.399102
Target:  5'- aGCGAugGCaaucCGcCGUGCGCGAUgaucgauuucaccgCGUCGa -3'
miRNA:   3'- cCGCUugCG----GC-GCACGCGCUA--------------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50343 0.67 0.475896
Target:  5'- cGGCGAACcgugcuuuCUGCGUGUGCcGGgugugUGCCGu -3'
miRNA:   3'- -CCGCUUGc-------GGCGCACGCG-CUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50118 0.72 0.216436
Target:  5'- cGGCGAucGCGCaCGCG-GCGU--UCGCCa -3'
miRNA:   3'- -CCGCU--UGCG-GCGCaCGCGcuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 49322 0.77 0.095472
Target:  5'- cGGCGAugGUuggcacggcaCGCGUGCGCGA-CGaCCGa -3'
miRNA:   3'- -CCGCUugCG----------GCGCACGCGCUaGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 48762 0.66 0.50942
Target:  5'- cGGCGuGCGCCGCGaguUGCguugcauggcgaacuGCGAUCaaucgagcuGCCc -3'
miRNA:   3'- -CCGCuUGCGGCGC---ACG---------------CGCUAG---------CGGc -5'
24896 5' -59.8 NC_005284.1 + 48425 0.7 0.320058
Target:  5'- uGCGAAgacgcgccaauCGCCGCGUGCaGUGcaguaccagcuUCGCCGg -3'
miRNA:   3'- cCGCUU-----------GCGGCGCACG-CGCu----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48238 0.68 0.384375
Target:  5'- uGGCGcaaagacuGACGCUGaCG-GCGCG-UUGCCGu -3'
miRNA:   3'- -CCGC--------UUGCGGC-GCaCGCGCuAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48028 0.67 0.428698
Target:  5'- cGGCuGAGCcuucauguGCUGCGUGC-CGAacUCGUCGa -3'
miRNA:   3'- -CCG-CUUG--------CGGCGCACGcGCU--AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47841 0.67 0.437919
Target:  5'- cGGCGccGGCGCCuucucCG-GUGCGA-CGCCGa -3'
miRNA:   3'- -CCGC--UUGCGGc----GCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47806 0.66 0.485646
Target:  5'- gGGCGAGCGCUugGCGgcGCuGCGAUgggUGCuCGg -3'
miRNA:   3'- -CCGCUUGCGG--CGCa-CG-CGCUA---GCG-GC- -5'
24896 5' -59.8 NC_005284.1 + 47792 0.66 0.505423
Target:  5'- cGGCGAGCGCCaUGU-CGaGcgCGCCa -3'
miRNA:   3'- -CCGCUUGCGGcGCAcGCgCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 47708 0.73 0.185662
Target:  5'- gGGCacgcGCGCuCGCGUGCGCaGAagGCCGu -3'
miRNA:   3'- -CCGcu--UGCG-GCGCACGCG-CUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47287 0.66 0.525539
Target:  5'- cGGCcguCGCCGCGUgaucaacgcGCGCGA--GCUGa -3'
miRNA:   3'- -CCGcuuGCGGCGCA---------CGCGCUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46768 0.66 0.492527
Target:  5'- -aCGAACaGCCGCGcauucgccugcaugUGCGCG-UCGUCa -3'
miRNA:   3'- ccGCUUG-CGGCGC--------------ACGCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 46681 0.69 0.367516
Target:  5'- gGGcCGAACGCCGCcgcgacCGCGGUUGCa- -3'
miRNA:   3'- -CC-GCUUGCGGCGcac---GCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 46409 0.69 0.327639
Target:  5'- uGCGAcugaaACGCCGCcgcCGCGAucaUCGCCGc -3'
miRNA:   3'- cCGCU-----UGCGGCGcacGCGCU---AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46127 0.71 0.276672
Target:  5'- aGGCaAACGCCGCauccgcuGUGCGCc--CGCCGu -3'
miRNA:   3'- -CCGcUUGCGGCG-------CACGCGcuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46064 0.69 0.359279
Target:  5'- cGCGGaucgaacugcGCGCCGCGUcgaGCGCGcgCaCCGu -3'
miRNA:   3'- cCGCU----------UGCGGCGCA---CGCGCuaGcGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.