miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 45970 0.67 0.447252
Target:  5'- uGGCGcAGCGUgGCGUGgacgaguggauUGCGucAUUGCCGg -3'
miRNA:   3'- -CCGC-UUGCGgCGCAC-----------GCGC--UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45896 0.67 0.475896
Target:  5'- aGCGGuUGCCGUGgucgcGCGCGAUgCGCa- -3'
miRNA:   3'- cCGCUuGCGGCGCa----CGCGCUA-GCGgc -5'
24896 5' -59.8 NC_005284.1 + 45652 0.66 0.525539
Target:  5'- uGGCGGcuCGUCG-GUGCGCGAggCGgUGg -3'
miRNA:   3'- -CCGCUu-GCGGCgCACGCGCUa-GCgGC- -5'
24896 5' -59.8 NC_005284.1 + 45546 0.71 0.245325
Target:  5'- cGCGcucuaugcCGCCGCGUgGCGCG-UCGCCc -3'
miRNA:   3'- cCGCuu------GCGGCGCA-CGCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45429 0.73 0.195466
Target:  5'- cGGCGAcgauauuCGCgGCGU-CGCGAUUGUCGg -3'
miRNA:   3'- -CCGCUu------GCGgCGCAcGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45314 0.69 0.367516
Target:  5'- uGCGu-CGCCGCGacUGCG-GAUUGCCc -3'
miRNA:   3'- cCGCuuGCGGCGC--ACGCgCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45228 0.76 0.113555
Target:  5'- uGGCGAGCGCUGCcUGCGCcgccucguguugcuuGAUCGUCu -3'
miRNA:   3'- -CCGCUUGCGGCGcACGCG---------------CUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45181 0.75 0.132309
Target:  5'- cGCGuucugaagcuucgcCGCCGCGgcaGCGCGAUCGCCc -3'
miRNA:   3'- cCGCuu------------GCGGCGCa--CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45071 0.7 0.305293
Target:  5'- gGGCGAGCGCgGCuacGCGCucgugaaGUUGCCGa -3'
miRNA:   3'- -CCGCUUGCGgCGca-CGCGc------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45006 0.7 0.312609
Target:  5'- uGGCGcGCGCCguuGCGacgugagcuUGCGCcGUCGCCu -3'
miRNA:   3'- -CCGCuUGCGG---CGC---------ACGCGcUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 44941 0.7 0.320058
Target:  5'- aGCGAugauCGCCGCGUaggGCgugcccgugauGCGcgCGCCGa -3'
miRNA:   3'- cCGCUu---GCGGCGCA---CG-----------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44862 0.68 0.419592
Target:  5'- aGCGccguACGCCGCugcUGCGCGAgCGCg- -3'
miRNA:   3'- cCGCu---UGCGGCGc--ACGCGCUaGCGgc -5'
24896 5' -59.8 NC_005284.1 + 44703 0.72 0.239302
Target:  5'- --aGAccCGCCGCG-GuCGCGGUCGCCGc -3'
miRNA:   3'- ccgCUu-GCGGCGCaC-GCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44657 0.84 0.031395
Target:  5'- cGCGAGCGCCGUcUGCGCcGUCGCCGc -3'
miRNA:   3'- cCGCUUGCGGCGcACGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44549 0.66 0.525539
Target:  5'- cGCGGcagccccaaGCGCCacCGUGCccaCGGUCGCCa -3'
miRNA:   3'- cCGCU---------UGCGGc-GCACGc--GCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 44074 0.66 0.525539
Target:  5'- cGGCGAGUGCCuGCGcGCcuuucugcgaaGCGAggccCGCCGu -3'
miRNA:   3'- -CCGCUUGCGG-CGCaCG-----------CGCUa---GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 43623 0.7 0.312609
Target:  5'- cGCGGcgGCCGCG-GCGCGAgcugCGUCa -3'
miRNA:   3'- cCGCUugCGGCGCaCGCGCUa---GCGGc -5'
24896 5' -59.8 NC_005284.1 + 43443 0.69 0.343196
Target:  5'- uGCGAcCGCCucgacGCGcaguUGCGCGAUCcgcuGCCGg -3'
miRNA:   3'- cCGCUuGCGG-----CGC----ACGCGCUAG----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 42737 0.66 0.505423
Target:  5'- uGGUGGAuucucCGCCGCGaucauuacgUGgGCGAUUGCg- -3'
miRNA:   3'- -CCGCUU-----GCGGCGC---------ACgCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 42256 0.68 0.409713
Target:  5'- -aCGAGCGUUugggcgaGUGUGCGcCGGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG-------CGCACGC-GCUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.