Results 101 - 120 of 120 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24896 | 5' | -59.8 | NC_005284.1 | + | 10670 | 0.81 | 0.049198 |
Target: 5'- uGGUGcGCGCCGCGgGCGCGAUCGacaCGg -3' miRNA: 3'- -CCGCuUGCGGCGCaCGCGCUAGCg--GC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9768 | 0.72 | 0.238706 |
Target: 5'- aGGCGAcggcgcaagcucACGUCGCaacgGCGCGcgccaacGUCGCCGg -3' miRNA: 3'- -CCGCU------------UGCGGCGca--CGCGC-------UAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9433 | 0.7 | 0.284134 |
Target: 5'- cGGCGuguCGCuCGCGgccggGCG-GAUUGCCGu -3' miRNA: 3'- -CCGCuu-GCG-GCGCa----CGCgCUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9213 | 0.71 | 0.257749 |
Target: 5'- aGGCGucgauaGCCGaGUGCGCGGgcgacgCGCCa -3' miRNA: 3'- -CCGCuug---CGGCgCACGCGCUa-----GCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 9079 | 0.67 | 0.428698 |
Target: 5'- cGCGAAgauguacaGCCGUGUcgacGCGCGGUCGUg- -3' miRNA: 3'- cCGCUUg-------CGGCGCA----CGCGCUAGCGgc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 8654 | 0.7 | 0.291056 |
Target: 5'- cGGCGGGCGCacaGCGgaUGCGgCGuUUGCCu -3' miRNA: 3'- -CCGCUUGCGg--CGC--ACGC-GCuAGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 8575 | 0.72 | 0.241696 |
Target: 5'- cGGCGAauacgaccgaauacgAcCGCCGCaUGCGCGGUCucucgucgacgGCCGg -3' miRNA: 3'- -CCGCU---------------U-GCGGCGcACGCGCUAG-----------CGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 7900 | 0.67 | 0.475896 |
Target: 5'- uGCGAACGCCGgGUu--CaAUCGCCGg -3' miRNA: 3'- cCGCUUGCGGCgCAcgcGcUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 7875 | 0.68 | 0.384375 |
Target: 5'- uGGCGAAaagaUCGCaGUGCGCGA--GCCGa -3' miRNA: 3'- -CCGCUUgc--GGCG-CACGCGCUagCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 7794 | 0.67 | 0.456695 |
Target: 5'- aGGCGuGACGagcCUGCGUGCaGCGGU-GCUGa -3' miRNA: 3'- -CCGC-UUGC---GGCGCACG-CGCUAgCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 7688 | 0.76 | 0.12178 |
Target: 5'- cGGCG-ACGUacaGCGUGCGCGugagcggugCGCCGa -3' miRNA: 3'- -CCGCuUGCGg--CGCACGCGCua-------GCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 7074 | 0.68 | 0.410605 |
Target: 5'- cGGCcuucuGCGCaCGCGaGCGCGcgUGCCc -3' miRNA: 3'- -CCGcu---UGCG-GCGCaCGCGCuaGCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 6828 | 0.66 | 0.485646 |
Target: 5'- gGGCGAuuCGCaccgaguugGCGcGCGCGAUCGaUCGu -3' miRNA: 3'- -CCGCUu-GCGg--------CGCaCGCGCUAGC-GGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 5952 | 0.7 | 0.305293 |
Target: 5'- uGCGGACGCCaCGgcugGCGCcgauccGAUCGUCGc -3' miRNA: 3'- cCGCUUGCGGcGCa---CGCG------CUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 5894 | 0.66 | 0.525539 |
Target: 5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3' miRNA: 3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 5454 | 0.68 | 0.401738 |
Target: 5'- cGGuCGucGCGCaCGCGUGcCGUGccaaccAUCGCCGu -3' miRNA: 3'- -CC-GCu-UGCG-GCGCAC-GCGC------UAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 5159 | 0.69 | 0.351172 |
Target: 5'- --gGAACGCCGCugacGCGCGAUCaGCUc -3' miRNA: 3'- ccgCUUGCGGCGca--CGCGCUAG-CGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 4782 | 0.66 | 0.515441 |
Target: 5'- aGCGGuACGUCGUGggGCGCGA--GCCu -3' miRNA: 3'- cCGCU-UGCGGCGCa-CGCGCUagCGGc -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 4668 | 1.09 | 0.000434 |
Target: 5'- uGGCGAACGCCGCGUGCGCGAUCGCCGc -3' miRNA: 3'- -CCGCUUGCGGCGCACGCGCUAGCGGC- -5' |
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24896 | 5' | -59.8 | NC_005284.1 | + | 715 | 0.72 | 0.233403 |
Target: 5'- --aGAugGCCGCGU-CGUGAUCGuuGu -3' miRNA: 3'- ccgCUugCGGCGCAcGCGCUAGCggC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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