miRNA display CGI


Results 1 - 20 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 27676 0.7 0.284134
Target:  5'- gGGCcGGCGUgGCGcGCG-GGUCGCCGc -3'
miRNA:   3'- -CCGcUUGCGgCGCaCGCgCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 25528 0.73 0.20572
Target:  5'- aGCGGcCGUCGuCGUGCGCGcGUCGCUc -3'
miRNA:   3'- cCGCUuGCGGC-GCACGCGC-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 21832 0.72 0.211019
Target:  5'- cGGCGcuuccAGCGCCgccgGCGUGgGCGAUggUGCCGc -3'
miRNA:   3'- -CCGC-----UUGCGG----CGCACgCGCUA--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50118 0.72 0.216436
Target:  5'- cGGCGAucGCGCaCGCG-GCGU--UCGCCa -3'
miRNA:   3'- -CCGCU--UGCG-GCGCaCGCGcuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 22746 0.72 0.235748
Target:  5'- uGGcCGAGCgGCUGCGgucgaucaaggggcGCGCGAUCGUCa -3'
miRNA:   3'- -CC-GCUUG-CGGCGCa-------------CGCGCUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 9768 0.72 0.238706
Target:  5'- aGGCGAcggcgcaagcucACGUCGCaacgGCGCGcgccaacGUCGCCGg -3'
miRNA:   3'- -CCGCU------------UGCGGCGca--CGCGC-------UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 8575 0.72 0.241696
Target:  5'- cGGCGAauacgaccgaauacgAcCGCCGCaUGCGCGGUCucucgucgacgGCCGg -3'
miRNA:   3'- -CCGCU---------------U-GCGGCGcACGCGCUAG-----------CGGC- -5'
24896 5' -59.8 NC_005284.1 + 45546 0.71 0.245325
Target:  5'- cGCGcucuaugcCGCCGCGUgGCGCG-UCGCCc -3'
miRNA:   3'- cCGCuu------GCGGCGCA-CGCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 32128 0.71 0.270683
Target:  5'- aGGCGcACGCUGC-UGCGCGcgauuccaaGUUGCCu -3'
miRNA:   3'- -CCGCuUGCGGCGcACGCGC---------UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45429 0.73 0.195466
Target:  5'- cGGCGAcgauauuCGCgGCGU-CGCGAUUGUCGg -3'
miRNA:   3'- -CCGCUu------GCGgCGCAcGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 18068 0.73 0.190019
Target:  5'- uGGCGGGCGCUGUGUGgaugaucgaaagcCGCGAgcUCGCgGc -3'
miRNA:   3'- -CCGCUUGCGGCGCAC-------------GCGCU--AGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 47708 0.73 0.185662
Target:  5'- gGGCacgcGCGCuCGCGUGCGCaGAagGCCGu -3'
miRNA:   3'- -CCGcu--UGCG-GCGCACGCG-CUagCGGC- -5'
24896 5' -59.8 NC_005284.1 + 10670 0.81 0.049198
Target:  5'- uGGUGcGCGCCGCGgGCGCGAUCGacaCGg -3'
miRNA:   3'- -CCGCuUGCGGCGCaCGCGCUAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 49322 0.77 0.095472
Target:  5'- cGGCGAugGUuggcacggcaCGCGUGCGCGA-CGaCCGa -3'
miRNA:   3'- -CCGCUugCG----------GCGCACGCGCUaGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 12639 0.76 0.115406
Target:  5'- cGGCGAuacgACGCUGCGUGUGCGcaaaGCCc -3'
miRNA:   3'- -CCGCU----UGCGGCGCACGCGCuag-CGGc -5'
24896 5' -59.8 NC_005284.1 + 31432 0.76 0.118553
Target:  5'- gGGCGAcguGCGCCGC-UGCG-GcgCGCCGg -3'
miRNA:   3'- -CCGCU---UGCGGCGcACGCgCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7688 0.76 0.12178
Target:  5'- cGGCG-ACGUacaGCGUGCGCGugagcggugCGCCGa -3'
miRNA:   3'- -CCGCuUGCGg--CGCACGCGCua-------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 21631 0.75 0.13552
Target:  5'- cGCGcucGACGCCGagcaGcGUGCGAUCGCCGc -3'
miRNA:   3'- cCGC---UUGCGGCg---CaCGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 31001 0.75 0.146746
Target:  5'- uGGCGcuUGCCGcCGUGCGUGcggaaGUUGCCGg -3'
miRNA:   3'- -CCGCuuGCGGC-GCACGCGC-----UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 19010 0.74 0.17177
Target:  5'- uGGCGuGugGUCGCugcagGCgGCGAUCGCCGa -3'
miRNA:   3'- -CCGC-UugCGGCGca---CG-CGCUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.