miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 36766 0.69 0.327639
Target:  5'- cGGCGAGCGugaCCGUGU-CGCcGUCGaCCGa -3'
miRNA:   3'- -CCGCUUGC---GGCGCAcGCGcUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 48028 0.67 0.428698
Target:  5'- cGGCuGAGCcuucauguGCUGCGUGC-CGAacUCGUCGa -3'
miRNA:   3'- -CCG-CUUG--------CGGCGCACGcGCU--AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 9079 0.67 0.428698
Target:  5'- cGCGAAgauguacaGCCGUGUcgacGCGCGGUCGUg- -3'
miRNA:   3'- cCGCUUg-------CGGCGCA----CGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 47841 0.67 0.437919
Target:  5'- cGGCGccGGCGCCuucucCG-GUGCGA-CGCCGa -3'
miRNA:   3'- -CCGC--UUGCGGc----GCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44074 0.66 0.525539
Target:  5'- cGGCGAGUGCCuGCGcGCcuuucugcgaaGCGAggccCGCCGu -3'
miRNA:   3'- -CCGCUUGCGG-CGCaCG-----------CGCUa---GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5894 0.66 0.525539
Target:  5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3'
miRNA:   3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 4782 0.66 0.515441
Target:  5'- aGCGGuACGUCGUGggGCGCGA--GCCu -3'
miRNA:   3'- cCGCU-UGCGGCGCa-CGCGCUagCGGc -5'
24896 5' -59.8 NC_005284.1 + 47792 0.66 0.505423
Target:  5'- cGGCGAGCGCCaUGU-CGaGcgCGCCa -3'
miRNA:   3'- -CCGCUUGCGGcGCAcGCgCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 36551 0.66 0.500446
Target:  5'- uGGCGGAacgaucgugaucgGCCGUugcugaaucuGUGCGCcgucgucGAUCGCCGc -3'
miRNA:   3'- -CCGCUUg------------CGGCG----------CACGCG-------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 24419 0.66 0.49549
Target:  5'- gGGcCGAGCGCauCGCccucGCGCucGAUCGCCu -3'
miRNA:   3'- -CC-GCUUGCG--GCGca--CGCG--CUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 42110 0.66 0.49549
Target:  5'- cGCGGccCGCUGgGUGUaGCcGUCGCCGa -3'
miRNA:   3'- cCGCUu-GCGGCgCACG-CGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46768 0.66 0.492527
Target:  5'- -aCGAACaGCCGCGcauucgccugcaugUGCGCG-UCGUCa -3'
miRNA:   3'- ccGCUUG-CGGCGC--------------ACGCGCuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 36856 0.67 0.475896
Target:  5'- cGGCGAuugucgGCGCCuuGUcgaGCGUGAuccuuUCGCCa -3'
miRNA:   3'- -CCGCU------UGCGGcgCA---CGCGCU-----AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 16192 0.67 0.475896
Target:  5'- -aUGAccuacuCGCCGCGUGCGC--UCgGCCGa -3'
miRNA:   3'- ccGCUu-----GCGGCGCACGCGcuAG-CGGC- -5'
24896 5' -59.8 NC_005284.1 + 45896 0.67 0.475896
Target:  5'- aGCGGuUGCCGUGgucgcGCGCGAUgCGCa- -3'
miRNA:   3'- cCGCUuGCGGCGCa----CGCGCUA-GCGgc -5'
24896 5' -59.8 NC_005284.1 + 7900 0.67 0.475896
Target:  5'- uGCGAACGCCGgGUu--CaAUCGCCGg -3'
miRNA:   3'- cCGCUUGCGGCgCAcgcGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 17793 0.67 0.466244
Target:  5'- aGGCGAACGCCGCGaagGuCG-GAaucagUGUCGa -3'
miRNA:   3'- -CCGCUUGCGGCGCa--C-GCgCUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 23353 0.67 0.456695
Target:  5'- cGGC--GCGCCGCagcgGCGCacGUCGCCc -3'
miRNA:   3'- -CCGcuUGCGGCGca--CGCGc-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 39700 0.67 0.455746
Target:  5'- cGCGGauacucuGCGagCGCGUGCGCcucaAUCGCCu -3'
miRNA:   3'- cCGCU-------UGCg-GCGCACGCGc---UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 13772 0.67 0.447252
Target:  5'- cGUGAACGUCcuccGCGaCGAUCGCCGu -3'
miRNA:   3'- cCGCUUGCGGcgcaCGC-GCUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.