miRNA display CGI


Results 21 - 40 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 7074 0.68 0.410605
Target:  5'- cGGCcuucuGCGCaCGCGaGCGCGcgUGCCc -3'
miRNA:   3'- -CCGcu---UGCG-GCGCaCGCGCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 48028 0.67 0.428698
Target:  5'- cGGCuGAGCcuucauguGCUGCGUGC-CGAacUCGUCGa -3'
miRNA:   3'- -CCG-CUUG--------CGGCGCACGcGCU--AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 16192 0.67 0.475896
Target:  5'- -aUGAccuacuCGCCGCGUGCGC--UCgGCCGa -3'
miRNA:   3'- ccGCUu-----GCGGCGCACGCGcuAG-CGGC- -5'
24896 5' -59.8 NC_005284.1 + 4782 0.66 0.515441
Target:  5'- aGCGGuACGUCGUGggGCGCGA--GCCu -3'
miRNA:   3'- cCGCU-UGCGGCGCa-CGCGCUagCGGc -5'
24896 5' -59.8 NC_005284.1 + 43443 0.69 0.343196
Target:  5'- uGCGAcCGCCucgacGCGcaguUGCGCGAUCcgcuGCCGg -3'
miRNA:   3'- cCGCUuGCGG-----CGC----ACGCGCUAG----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 38833 0.68 0.396477
Target:  5'- cGGCGAACgugagGCCgGCGUcGCGCGccgacgucaggaaCGCCGg -3'
miRNA:   3'- -CCGCUUG-----CGG-CGCA-CGCGCua-----------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47841 0.67 0.437919
Target:  5'- cGGCGccGGCGCCuucucCG-GUGCGA-CGCCGa -3'
miRNA:   3'- -CCGC--UUGCGGc----GCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5894 0.66 0.525539
Target:  5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3'
miRNA:   3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50749 0.68 0.399102
Target:  5'- aGCGAugGCaaucCGcCGUGCGCGAUgaucgauuucaccgCGUCGa -3'
miRNA:   3'- cCGCUugCG----GC-GCACGCGCUA--------------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 44074 0.66 0.525539
Target:  5'- cGGCGAGUGCCuGCGcGCcuuucugcgaaGCGAggccCGCCGu -3'
miRNA:   3'- -CCGCUUGCGG-CGCaCG-----------CGCUa---GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 9079 0.67 0.428698
Target:  5'- cGCGAAgauguacaGCCGUGUcgacGCGCGGUCGUg- -3'
miRNA:   3'- cCGCUUg-------CGGCGCA----CGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 12012 0.68 0.410605
Target:  5'- cGGCGcGAgGuuGuUGUGCGUGGUCGCa- -3'
miRNA:   3'- -CCGC-UUgCggC-GCACGCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 23353 0.67 0.456695
Target:  5'- cGGC--GCGCCGCagcgGCGCacGUCGCCc -3'
miRNA:   3'- -CCGcuUGCGGCGca--CGCGc-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45896 0.67 0.475896
Target:  5'- aGCGGuUGCCGUGgucgcGCGCGAUgCGCa- -3'
miRNA:   3'- cCGCUuGCGGCGCa----CGCGCUA-GCGgc -5'
24896 5' -59.8 NC_005284.1 + 42110 0.66 0.49549
Target:  5'- cGCGGccCGCUGgGUGUaGCcGUCGCCGa -3'
miRNA:   3'- cCGCUu-GCGGCgCACG-CGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47792 0.66 0.505423
Target:  5'- cGGCGAGCGCCaUGU-CGaGcgCGCCa -3'
miRNA:   3'- -CCGCUUGCGGcGCAcGCgCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45006 0.7 0.312609
Target:  5'- uGGCGcGCGCCguuGCGacgugagcuUGCGCcGUCGCCu -3'
miRNA:   3'- -CCGCuUGCGG---CGC---------ACGCGcUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 46409 0.69 0.327639
Target:  5'- uGCGAcugaaACGCCGCcgcCGCGAucaUCGCCGc -3'
miRNA:   3'- cCGCU-----UGCGGCGcacGCGCU---AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 32940 0.69 0.367516
Target:  5'- cGGCGGcaccaucgcccACGCCgGCG-GCGCuGGaagCGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGG-CGCaCGCG-CUa--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 33117 0.68 0.392994
Target:  5'- cGGCGGccacCGCCGacgcggcggcauCGUGCGCGGcgaUCGCaCGc -3'
miRNA:   3'- -CCGCUu---GCGGC------------GCACGCGCU---AGCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.