miRNA display CGI


Results 41 - 60 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 47841 0.67 0.437919
Target:  5'- cGGCGccGGCGCCuucucCG-GUGCGA-CGCCGa -3'
miRNA:   3'- -CCGC--UUGCGGc----GCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5894 0.66 0.525539
Target:  5'- aGCGAcaccuuCGCCGCcggGCGUGuccacggCGCCGa -3'
miRNA:   3'- cCGCUu-----GCGGCGca-CGCGCua-----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47792 0.66 0.505423
Target:  5'- cGGCGAGCGCCaUGU-CGaGcgCGCCa -3'
miRNA:   3'- -CCGCUUGCGGcGCAcGCgCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 42110 0.66 0.49549
Target:  5'- cGCGGccCGCUGgGUGUaGCcGUCGCCGa -3'
miRNA:   3'- cCGCUu-GCGGCgCACG-CGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45228 0.76 0.113555
Target:  5'- uGGCGAGCGCUGCcUGCGCcgccucguguugcuuGAUCGUCu -3'
miRNA:   3'- -CCGCUUGCGGCGcACGCG---------------CUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 44703 0.72 0.239302
Target:  5'- --aGAccCGCCGCG-GuCGCGGUCGCCGc -3'
miRNA:   3'- ccgCUu-GCGGCGCaC-GCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 27859 0.71 0.277344
Target:  5'- -aCGAcGCGCCGCccgGCGC-AUCGCCGa -3'
miRNA:   3'- ccGCU-UGCGGCGca-CGCGcUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45006 0.7 0.312609
Target:  5'- uGGCGcGCGCCguuGCGacgugagcuUGCGCcGUCGCCu -3'
miRNA:   3'- -CCGCuUGCGG---CGC---------ACGCGcUAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 46409 0.69 0.327639
Target:  5'- uGCGAcugaaACGCCGCcgcCGCGAucaUCGCCGc -3'
miRNA:   3'- cCGCU-----UGCGGCGcacGCGCU---AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 46681 0.69 0.367516
Target:  5'- gGGcCGAACGCCGCcgcgacCGCGGUUGCa- -3'
miRNA:   3'- -CC-GCUUGCGGCGcac---GCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 50749 0.68 0.399102
Target:  5'- aGCGAugGCaaucCGcCGUGCGCGAUgaucgauuucaccgCGUCGa -3'
miRNA:   3'- cCGCUugCG----GC-GCACGCGCUA--------------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7074 0.68 0.410605
Target:  5'- cGGCcuucuGCGCaCGCGaGCGCGcgUGCCc -3'
miRNA:   3'- -CCGcu---UGCG-GCGCaCGCGCuaGCGGc -5'
24896 5' -59.8 NC_005284.1 + 48028 0.67 0.428698
Target:  5'- cGGCuGAGCcuucauguGCUGCGUGC-CGAacUCGUCGa -3'
miRNA:   3'- -CCG-CUUG--------CGGCGCACGcGCU--AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 23353 0.67 0.456695
Target:  5'- cGGC--GCGCCGCagcgGCGCacGUCGCCc -3'
miRNA:   3'- -CCGcuUGCGGCGca--CGCGc-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 45896 0.67 0.475896
Target:  5'- aGCGGuUGCCGUGgucgcGCGCGAUgCGCa- -3'
miRNA:   3'- cCGCUuGCGGCGCa----CGCGCUA-GCGgc -5'
24896 5' -59.8 NC_005284.1 + 46064 0.69 0.359279
Target:  5'- cGCGGaucgaacugcGCGCCGCGUcgaGCGCGcgCaCCGu -3'
miRNA:   3'- cCGCU----------UGCGGCGCA---CGCGCuaGcGGC- -5'
24896 5' -59.8 NC_005284.1 + 45652 0.66 0.525539
Target:  5'- uGGCGGcuCGUCG-GUGCGCGAggCGgUGg -3'
miRNA:   3'- -CCGCUu-GCGGCgCACGCGCUa-GCgGC- -5'
24896 5' -59.8 NC_005284.1 + 48425 0.7 0.320058
Target:  5'- uGCGAAgacgcgccaauCGCCGCGUGCaGUGcaguaccagcuUCGCCGg -3'
miRNA:   3'- cCGCUU-----------GCGGCGCACG-CGCu----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50118 0.72 0.216436
Target:  5'- cGGCGAucGCGCaCGCG-GCGU--UCGCCa -3'
miRNA:   3'- -CCGCU--UGCG-GCGCaCGCGcuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 53798 0.69 0.327639
Target:  5'- cGGCGAGCGCaucuuGCGUcauGCGCaGAUgauugCGCCa -3'
miRNA:   3'- -CCGCUUGCGg----CGCA---CGCG-CUA-----GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.