miRNA display CGI


Results 61 - 80 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 21631 0.75 0.13552
Target:  5'- cGCGcucGACGCCGagcaGcGUGCGAUCGCCGc -3'
miRNA:   3'- cCGC---UUGCGGCg---CaCGCGCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48762 0.66 0.50942
Target:  5'- cGGCGuGCGCCGCGaguUGCguugcauggcgaacuGCGAUCaaucgagcuGCCc -3'
miRNA:   3'- -CCGCuUGCGGCGC---ACG---------------CGCUAG---------CGGc -5'
24896 5' -59.8 NC_005284.1 + 15936 0.7 0.312609
Target:  5'- cGGCGuuccuGACGUCG-GcGCGCGA-CGCCGg -3'
miRNA:   3'- -CCGC-----UUGCGGCgCaCGCGCUaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 48425 0.7 0.320058
Target:  5'- uGCGAAgacgcgccaauCGCCGCGUGCaGUGcaguaccagcuUCGCCGg -3'
miRNA:   3'- cCGCUU-----------GCGGCGCACG-CGCu----------AGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 25528 0.73 0.20572
Target:  5'- aGCGGcCGUCGuCGUGCGCGcGUCGCUc -3'
miRNA:   3'- cCGCUuGCGGC-GCACGCGC-UAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 21832 0.72 0.211019
Target:  5'- cGGCGcuuccAGCGCCgccgGCGUGgGCGAUggUGCCGc -3'
miRNA:   3'- -CCGC-----UUGCGG----CGCACgCGCUA--GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50118 0.72 0.216436
Target:  5'- cGGCGAucGCGCaCGCG-GCGU--UCGCCa -3'
miRNA:   3'- -CCGCU--UGCG-GCGCaCGCGcuAGCGGc -5'
24896 5' -59.8 NC_005284.1 + 21666 0.67 0.475896
Target:  5'- -aCGAugcCGCCGCGUcgGCGGUgGCCGc -3'
miRNA:   3'- ccGCUu--GCGGCGCAcgCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 50343 0.67 0.475896
Target:  5'- cGGCGAACcgugcuuuCUGCGUGUGCcGGgugugUGCCGu -3'
miRNA:   3'- -CCGCUUGc-------GGCGCACGCG-CUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 5952 0.7 0.305293
Target:  5'- uGCGGACGCCaCGgcugGCGCcgauccGAUCGUCGc -3'
miRNA:   3'- cCGCUUGCGGcGCa---CGCG------CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 6828 0.66 0.485646
Target:  5'- gGGCGAuuCGCaccgaguugGCGcGCGCGAUCGaUCGu -3'
miRNA:   3'- -CCGCUu-GCGg--------CGCaCGCGCUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 19108 0.66 0.502434
Target:  5'- uGCuGAACGCCGCgGUGCagaaggagacgauuGCGcgUGUCGa -3'
miRNA:   3'- cCG-CUUGCGGCG-CACG--------------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 42737 0.66 0.505423
Target:  5'- uGGUGGAuucucCGCCGCGaucauuacgUGgGCGAUUGCg- -3'
miRNA:   3'- -CCGCUU-----GCGGCGC---------ACgCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 54678 0.66 0.505423
Target:  5'- cGGCGAagACGgCGCGcGaGCGGUUGCgGu -3'
miRNA:   3'- -CCGCU--UGCgGCGCaCgCGCUAGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 12265 0.66 0.505423
Target:  5'- cGGCGAguucgugguccGCGCCGCaGUG-GUGucgcaGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGGCG-CACgCGCuag--CGGC- -5'
24896 5' -59.8 NC_005284.1 + 12357 0.66 0.515441
Target:  5'- cGCGAuuCGCCGCGgGUGgGcUCGuuGg -3'
miRNA:   3'- cCGCUu-GCGGCGCaCGCgCuAGCggC- -5'
24896 5' -59.8 NC_005284.1 + 45652 0.66 0.525539
Target:  5'- uGGCGGcuCGUCG-GUGCGCGAggCGgUGg -3'
miRNA:   3'- -CCGCUu-GCGGCgCACGCGCUa-GCgGC- -5'
24896 5' -59.8 NC_005284.1 + 35508 0.66 0.529598
Target:  5'- aGCGAAacgaaGCCGUcgaagagcgauucccGUGuCGCGGUCGCg- -3'
miRNA:   3'- cCGCUUg----CGGCG---------------CAC-GCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 16302 0.66 0.53571
Target:  5'- gGGCGAGCcgguGCCGCucgucaucgGCGaaauGGUCGUCGg -3'
miRNA:   3'- -CCGCUUG----CGGCGca-------CGCg---CUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47806 0.66 0.485646
Target:  5'- gGGCGAGCGCUugGCGgcGCuGCGAUgggUGCuCGg -3'
miRNA:   3'- -CCGCUUGCGG--CGCa-CG-CGCUA---GCG-GC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.