miRNA display CGI


Results 81 - 100 of 120 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24896 5' -59.8 NC_005284.1 + 42256 0.68 0.409713
Target:  5'- -aCGAGCGUUugggcgaGUGUGCGcCGGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG-------CGCACGC-GCUAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 45970 0.67 0.447252
Target:  5'- uGGCGcAGCGUgGCGUGgacgaguggauUGCGucAUUGCCGg -3'
miRNA:   3'- -CCGC-UUGCGgCGCAC-----------GCGC--UAGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 47806 0.66 0.485646
Target:  5'- gGGCGAGCGCUugGCGgcGCuGCGAUgggUGCuCGg -3'
miRNA:   3'- -CCGCUUGCGG--CGCa-CG-CGCUA---GCG-GC- -5'
24896 5' -59.8 NC_005284.1 + 6828 0.66 0.485646
Target:  5'- gGGCGAuuCGCaccgaguugGCGcGCGCGAUCGaUCGu -3'
miRNA:   3'- -CCGCUu-GCGg--------CGCaCGCGCUAGC-GGC- -5'
24896 5' -59.8 NC_005284.1 + 19108 0.66 0.502434
Target:  5'- uGCuGAACGCCGCgGUGCagaaggagacgauuGCGcgUGUCGa -3'
miRNA:   3'- cCG-CUUGCGGCG-CACG--------------CGCuaGCGGC- -5'
24896 5' -59.8 NC_005284.1 + 42737 0.66 0.505423
Target:  5'- uGGUGGAuucucCGCCGCGaucauuacgUGgGCGAUUGCg- -3'
miRNA:   3'- -CCGCUU-----GCGGCGC---------ACgCGCUAGCGgc -5'
24896 5' -59.8 NC_005284.1 + 54678 0.66 0.505423
Target:  5'- cGGCGAagACGgCGCGcGaGCGGUUGCgGu -3'
miRNA:   3'- -CCGCU--UGCgGCGCaCgCGCUAGCGgC- -5'
24896 5' -59.8 NC_005284.1 + 12265 0.66 0.505423
Target:  5'- cGGCGAguucgugguccGCGCCGCaGUG-GUGucgcaGCCGg -3'
miRNA:   3'- -CCGCU-----------UGCGGCG-CACgCGCuag--CGGC- -5'
24896 5' -59.8 NC_005284.1 + 48762 0.66 0.50942
Target:  5'- cGGCGuGCGCCGCGaguUGCguugcauggcgaacuGCGAUCaaucgagcuGCCc -3'
miRNA:   3'- -CCGCuUGCGGCGC---ACG---------------CGCUAG---------CGGc -5'
24896 5' -59.8 NC_005284.1 + 12357 0.66 0.515441
Target:  5'- cGCGAuuCGCCGCGgGUGgGcUCGuuGg -3'
miRNA:   3'- cCGCUu-GCGGCGCaCGCgCuAGCggC- -5'
24896 5' -59.8 NC_005284.1 + 50343 0.67 0.475896
Target:  5'- cGGCGAACcgugcuuuCUGCGUGUGCcGGgugugUGCCGu -3'
miRNA:   3'- -CCGCUUGc-------GGCGCACGCG-CUa----GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 21666 0.67 0.475896
Target:  5'- -aCGAugcCGCCGCGUcgGCGGUgGCCGc -3'
miRNA:   3'- ccGCUu--GCGGCGCAcgCGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 7794 0.67 0.456695
Target:  5'- aGGCGuGACGagcCUGCGUGCaGCGGU-GCUGa -3'
miRNA:   3'- -CCGC-UUGC---GGCGCACG-CGCUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 14940 0.67 0.456695
Target:  5'- uGCGAACGUCGauuugGCGUGAauaacgcgCGCCGu -3'
miRNA:   3'- cCGCUUGCGGCgca--CGCGCUa-------GCGGC- -5'
24896 5' -59.8 NC_005284.1 + 21336 0.67 0.456695
Target:  5'- uGGCGGG-GCgCGUGUcGCGCGAUCaacgaGUCGg -3'
miRNA:   3'- -CCGCUUgCG-GCGCA-CGCGCUAG-----CGGC- -5'
24896 5' -59.8 NC_005284.1 + 24722 0.67 0.456695
Target:  5'- gGGCGAaacgACGCC-CGUGCGUcuUCgGCCc -3'
miRNA:   3'- -CCGCU----UGCGGcGCACGCGcuAG-CGGc -5'
24896 5' -59.8 NC_005284.1 + 31338 0.67 0.456695
Target:  5'- cGGCGAGCGaCGCGcagaacacGCGCugucGGUgGCCGu -3'
miRNA:   3'- -CCGCUUGCgGCGCa-------CGCG----CUAgCGGC- -5'
24896 5' -59.8 NC_005284.1 + 33271 0.67 0.456695
Target:  5'- gGGCGAugcUGCCGCGcGUGCuucUUGCCa -3'
miRNA:   3'- -CCGCUu--GCGGCGCaCGCGcu-AGCGGc -5'
24896 5' -59.8 NC_005284.1 + 34004 0.67 0.466244
Target:  5'- cGGCGAGgGCCGauucUGCGCGuUCGaggCGg -3'
miRNA:   3'- -CCGCUUgCGGCgc--ACGCGCuAGCg--GC- -5'
24896 5' -59.8 NC_005284.1 + 33854 0.67 0.475896
Target:  5'- -uCGAGCGCUuuGUGUGUGUcGUCGUCGa -3'
miRNA:   3'- ccGCUUGCGG--CGCACGCGcUAGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.