miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24898 5' -58.2 NC_005284.1 + 18174 0.67 0.510601
Target:  5'- gGUgGccAGUUCGGCACCCUCuuuuuccucuGCGGAg -3'
miRNA:   3'- gCAgC--UCGAGCUGUGGGAGcu--------CGCCU- -5'
24898 5' -58.2 NC_005284.1 + 6482 0.67 0.500493
Target:  5'- -aUCGGGCUCGcCgACCUgCGuGCGGAu -3'
miRNA:   3'- gcAGCUCGAGCuG-UGGGaGCuCGCCU- -5'
24898 5' -58.2 NC_005284.1 + 8750 0.68 0.480549
Target:  5'- cCGUCGAggccuGCUCGACGCCCggCGA-CaGAu -3'
miRNA:   3'- -GCAGCU-----CGAGCUGUGGGa-GCUcGcCU- -5'
24898 5' -58.2 NC_005284.1 + 46685 0.68 0.470724
Target:  5'- gGUCGGGCUCGagucggaaacGCGCCaUUGGGCGa- -3'
miRNA:   3'- gCAGCUCGAGC----------UGUGGgAGCUCGCcu -5'
24898 5' -58.2 NC_005284.1 + 46630 0.68 0.461002
Target:  5'- aCGUCGAGCUUGcCGaaUUCGAGCGc- -3'
miRNA:   3'- -GCAGCUCGAGCuGUggGAGCUCGCcu -5'
24898 5' -58.2 NC_005284.1 + 7613 0.68 0.458105
Target:  5'- -uUCGGGUUCGGCGCCUgauguacgcgccggUCGuacAGCGGGu -3'
miRNA:   3'- gcAGCUCGAGCUGUGGG--------------AGC---UCGCCU- -5'
24898 5' -58.2 NC_005284.1 + 30256 0.68 0.441882
Target:  5'- cCGUCGAGCgggcgCGuucguuCGCUgUCGAGUGGc -3'
miRNA:   3'- -GCAGCUCGa----GCu-----GUGGgAGCUCGCCu -5'
24898 5' -58.2 NC_005284.1 + 7484 0.69 0.405037
Target:  5'- --cCGAGCUCGGCuuGCCCgaucCGGGCGa- -3'
miRNA:   3'- gcaGCUCGAGCUG--UGGGa---GCUCGCcu -5'
24898 5' -58.2 NC_005284.1 + 41712 0.7 0.377849
Target:  5'- gCGUCaGGUUCguacuaucguugaGACACCUgagaUCGAGCGGAg -3'
miRNA:   3'- -GCAGcUCGAG-------------CUGUGGG----AGCUCGCCU- -5'
24898 5' -58.2 NC_005284.1 + 53157 0.71 0.314306
Target:  5'- -aUCGAGCUUGcGCGCCaugUCGAGCGcGAg -3'
miRNA:   3'- gcAGCUCGAGC-UGUGGg--AGCUCGC-CU- -5'
24898 5' -58.2 NC_005284.1 + 16010 0.71 0.306864
Target:  5'- --aCGAGCUCGAgCAUCCggUCGGGCGcGAc -3'
miRNA:   3'- gcaGCUCGAGCU-GUGGG--AGCUCGC-CU- -5'
24898 5' -58.2 NC_005284.1 + 51078 0.74 0.205753
Target:  5'- uGUCGAGCUCGACgacgGCCaaaUCGAaauGCGGu -3'
miRNA:   3'- gCAGCUCGAGCUG----UGGg--AGCU---CGCCu -5'
24898 5' -58.2 NC_005284.1 + 32528 0.8 0.073601
Target:  5'- uCGUCaGGCUCGcCACCCUCGcGGCGGGc -3'
miRNA:   3'- -GCAGcUCGAGCuGUGGGAGC-UCGCCU- -5'
24898 5' -58.2 NC_005284.1 + 3720 1.08 0.000714
Target:  5'- uCGUCGAGCUCGACACCCUCGAGCGGAc -3'
miRNA:   3'- -GCAGCUCGAGCUGUGGGAGCUCGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.