miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24899 3' -51.7 NC_005284.1 + 37012 0.66 0.89012
Target:  5'- cCCGGUCucguaccgcgAcgUcagcagcagccagcGCCCGAGCCgg-UGCg -3'
miRNA:   3'- aGGCCAG----------UuaA--------------CGGGCUCGGuaaACG- -5'
24899 3' -51.7 NC_005284.1 + 39419 0.66 0.884826
Target:  5'- aCCaGUCGucgaUGCCgauCGAGCCAUcgGCc -3'
miRNA:   3'- aGGcCAGUua--ACGG---GCUCGGUAaaCG- -5'
24899 3' -51.7 NC_005284.1 + 23336 0.66 0.860647
Target:  5'- -gCGGUCAAUUggggGCCCGGcgcGCCGcagcgGCg -3'
miRNA:   3'- agGCCAGUUAA----CGGGCU---CGGUaaa--CG- -5'
24899 3' -51.7 NC_005284.1 + 23931 0.67 0.852072
Target:  5'- gUUCGuUCAGUUGCCCcGGUCGUcgaccggggcuUUGCa -3'
miRNA:   3'- -AGGCcAGUUAACGGGcUCGGUA-----------AACG- -5'
24899 3' -51.7 NC_005284.1 + 35150 0.67 0.852072
Target:  5'- cCCGGUCg---GCuCCGuuguauGCCGUgUGCg -3'
miRNA:   3'- aGGCCAGuuaaCG-GGCu-----CGGUAaACG- -5'
24899 3' -51.7 NC_005284.1 + 30239 0.67 0.815432
Target:  5'- gUCGGUCuggccggauAUUGUCCGGccguccGCUGUUUGCa -3'
miRNA:   3'- aGGCCAGu--------UAACGGGCU------CGGUAAACG- -5'
24899 3' -51.7 NC_005284.1 + 26091 0.69 0.743936
Target:  5'- aUCC-GUCAAUUGgCUGAcaGCCAUcgGCa -3'
miRNA:   3'- -AGGcCAGUUAACgGGCU--CGGUAaaCG- -5'
24899 3' -51.7 NC_005284.1 + 47214 0.69 0.711255
Target:  5'- aCCGcGUgCAGggcgUGCUCGAGCCgg-UGCu -3'
miRNA:   3'- aGGC-CA-GUUa---ACGGGCUCGGuaaACG- -5'
24899 3' -51.7 NC_005284.1 + 24764 0.71 0.621361
Target:  5'- cCCGGUCGAUaaaaaggucaucUGCaaG-GCCGUUUGUg -3'
miRNA:   3'- aGGCCAGUUA------------ACGggCuCGGUAAACG- -5'
24899 3' -51.7 NC_005284.1 + 54354 0.73 0.510298
Target:  5'- gCCgGGUCGAgccccagcaUUGCgCCGAaacucGCCAUUUGCg -3'
miRNA:   3'- aGG-CCAGUU---------AACG-GGCU-----CGGUAAACG- -5'
24899 3' -51.7 NC_005284.1 + 36260 0.75 0.417989
Target:  5'- cCCGGUCAGUUGCguaUCGAcGCCGUacGCc -3'
miRNA:   3'- aGGCCAGUUAACG---GGCU-CGGUAaaCG- -5'
24899 3' -51.7 NC_005284.1 + 3443 1.14 0.001017
Target:  5'- aUCCGGUCAAUUGCCCGAGCCAUUUGCg -3'
miRNA:   3'- -AGGCCAGUUAACGGGCUCGGUAAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.