miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
249 5' -56.5 AC_000008.1 + 25336 0.66 0.531087
Target:  5'- uUGCGCGCg--CCUGACcggccagaGCGUcCCGa- -3'
miRNA:   3'- -ACGCGCGuuaGGACUG--------CGCAaGGCcg -5'
249 5' -56.5 AC_000008.1 + 16398 0.66 0.528919
Target:  5'- gGUGCGCGAcucgguuagcggCCUG-CGCGUgcCCGuGCg -3'
miRNA:   3'- aCGCGCGUUa-----------GGACuGCGCAa-GGC-CG- -5'
249 5' -56.5 AC_000008.1 + 5344 0.67 0.488402
Target:  5'- gGUGCGC--UCCgGGCuGCGcgCUGGCc -3'
miRNA:   3'- aCGCGCGuuAGGaCUG-CGCaaGGCCG- -5'
249 5' -56.5 AC_000008.1 + 24418 0.67 0.467668
Target:  5'- gUGCGCGCGcgggacuaAUCCcgGuucGCGCG-UCgGGCu -3'
miRNA:   3'- -ACGCGCGU--------UAGGa-C---UGCGCaAGgCCG- -5'
249 5' -56.5 AC_000008.1 + 8088 0.67 0.447397
Target:  5'- cGUGCGCAGUaCUGGCaGCGgugcaCgGGCu -3'
miRNA:   3'- aCGCGCGUUAgGACUG-CGCaa---GgCCG- -5'
249 5' -56.5 AC_000008.1 + 10475 0.68 0.39616
Target:  5'- gGCGCGCGgaaaGUCgCgGACGCgGUUCCagauguugcgcagcGGCa -3'
miRNA:   3'- aCGCGCGU----UAG-GaCUGCG-CAAGG--------------CCG- -5'
249 5' -56.5 AC_000008.1 + 8658 0.69 0.362707
Target:  5'- cGCGCGCGggcaggagcugGUgCUGcGCGCGUagguugCUGGCg -3'
miRNA:   3'- aCGCGCGU-----------UAgGAC-UGCGCAa-----GGCCG- -5'
249 5' -56.5 AC_000008.1 + 8861 0.7 0.312756
Target:  5'- aGCGCGCAGUauuuaCUGAagagagccucCGCGUcuUCCaGCg -3'
miRNA:   3'- aCGCGCGUUAg----GACU----------GCGCA--AGGcCG- -5'
249 5' -56.5 AC_000008.1 + 23848 0.7 0.289805
Target:  5'- aGCuCGCGGUCgCUGAgcuCGCGccgCCGGCu -3'
miRNA:   3'- aCGcGCGUUAG-GACU---GCGCaa-GGCCG- -5'
249 5' -56.5 AC_000008.1 + 27216 0.7 0.289063
Target:  5'- cGCGCGCAGcaccagcUCCUGcccGCGCG---CGGCg -3'
miRNA:   3'- aCGCGCGUU-------AGGAC---UGCGCaagGCCG- -5'
249 5' -56.5 AC_000008.1 + 12908 0.71 0.282454
Target:  5'- cUGCGUGCAc----GACGCGgccugUCCGGCc -3'
miRNA:   3'- -ACGCGCGUuaggaCUGCGCa----AGGCCG- -5'
249 5' -56.5 AC_000008.1 + 7240 0.72 0.247908
Target:  5'- aGCGCGUAugCCUG-CGCGgccUUCCGGa -3'
miRNA:   3'- aCGCGCGUuaGGACuGCGC---AAGGCCg -5'
249 5' -56.5 AC_000008.1 + 10560 0.74 0.17918
Target:  5'- cGCGCGCAAUCgUUGACGCucuagaCCGuGCa -3'
miRNA:   3'- aCGCGCGUUAG-GACUGCGcaa---GGC-CG- -5'
249 5' -56.5 AC_000008.1 + 23477 0.75 0.142869
Target:  5'- uUGCGCGCAGUCagcgacaUGAUGCGgUCCaugaccuGGCg -3'
miRNA:   3'- -ACGCGCGUUAGg------ACUGCGCaAGG-------CCG- -5'
249 5' -56.5 AC_000008.1 + 12418 1.12 0.000261
Target:  5'- cUGCGCGCAAUCCUGACGCGUUCCGGCa -3'
miRNA:   3'- -ACGCGCGUUAGGACUGCGCAAGGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.