Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24900 | 3' | -56.5 | NC_005284.1 | + | 45199 | 0.7 | 0.378306 |
Target: 5'- -cGCCgCGGCAGCGCGaucgcccugcgcuUUGGcgagcGCUGCCu -3' miRNA: 3'- uuUGG-GCCGUCGCGC-------------AGCCa----UGAUGG- -5' |
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24900 | 3' | -56.5 | NC_005284.1 | + | 12127 | 0.71 | 0.370445 |
Target: 5'- uGAugCCGuCGGCGCGcUCGGUGgUGCg -3' miRNA: 3'- -UUugGGCcGUCGCGC-AGCCAUgAUGg -5' |
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24900 | 3' | -56.5 | NC_005284.1 | + | 458 | 0.73 | 0.269668 |
Target: 5'- cGAgCCGGCAGCGCcugGUCGGcGCaaaGCCg -3' miRNA: 3'- uUUgGGCCGUCGCG---CAGCCaUGa--UGG- -5' |
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24900 | 3' | -56.5 | NC_005284.1 | + | 1127 | 0.73 | 0.256283 |
Target: 5'- cAACCCGGgcgaCGGCGCGUCGccaucGUGCU-CCa -3' miRNA: 3'- uUUGGGCC----GUCGCGCAGC-----CAUGAuGG- -5' |
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24900 | 3' | -56.5 | NC_005284.1 | + | 1053 | 1.1 | 0.000606 |
Target: 5'- gAAACCCGGCAGCGCGUCGGUACUACCg -3' miRNA: 3'- -UUUGGGCCGUCGCGCAGCCAUGAUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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