miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24900 5' -53.8 NC_005284.1 + 48056 0.66 0.783913
Target:  5'- -gGAGGagGCCGGUGCGCUgcgcauuacgcGCCGg- -3'
miRNA:   3'- gaUUCUagCGGUCGCGUGAa----------CGGCac -5'
24900 5' -53.8 NC_005284.1 + 53356 0.66 0.782902
Target:  5'- -----uUCGCCAGCGCagugacguauccuGCUaGCUGUGc -3'
miRNA:   3'- gauucuAGCGGUCGCG-------------UGAaCGGCAC- -5'
24900 5' -53.8 NC_005284.1 + 45650 0.66 0.763391
Target:  5'- gCUGgcGGcUCGUCGGUGCGCgagGCgGUGg -3'
miRNA:   3'- -GAU--UCuAGCGGUCGCGUGaa-CGgCAC- -5'
24900 5' -53.8 NC_005284.1 + 53960 0.66 0.742308
Target:  5'- -----cUUGCCGGUGCGCUUGuuGa- -3'
miRNA:   3'- gauucuAGCGGUCGCGUGAACggCac -5'
24900 5' -53.8 NC_005284.1 + 21017 0.67 0.731587
Target:  5'- -gAAGucggCGCCGGCGCACUucgacagaaUGUCGc- -3'
miRNA:   3'- gaUUCua--GCGGUCGCGUGA---------ACGGCac -5'
24900 5' -53.8 NC_005284.1 + 15806 0.67 0.731587
Target:  5'- ----cGUCGCCAGCGCGCa-GCCc-- -3'
miRNA:   3'- gauucUAGCGGUCGCGUGaaCGGcac -5'
24900 5' -53.8 NC_005284.1 + 51743 0.67 0.69885
Target:  5'- -aAAGAUCG-CGGCGCGCcUGCgggaaGUGg -3'
miRNA:   3'- gaUUCUAGCgGUCGCGUGaACGg----CAC- -5'
24900 5' -53.8 NC_005284.1 + 32765 0.67 0.687786
Target:  5'- -cAGGAUCGUCGcgcucGCGCGCcucUGCCGg- -3'
miRNA:   3'- gaUUCUAGCGGU-----CGCGUGa--ACGGCac -5'
24900 5' -53.8 NC_005284.1 + 6954 0.68 0.676668
Target:  5'- -gGAGAaggCGCCGGCGCcguAUUUcGUCGUGa -3'
miRNA:   3'- gaUUCUa--GCGGUCGCG---UGAA-CGGCAC- -5'
24900 5' -53.8 NC_005284.1 + 12401 0.68 0.643093
Target:  5'- -gGGGAuUCGCCGGCGCGCaacgGCgGg- -3'
miRNA:   3'- gaUUCU-AGCGGUCGCGUGaa--CGgCac -5'
24900 5' -53.8 NC_005284.1 + 36859 0.68 0.631866
Target:  5'- ---cGAUUGUCGGCGC-CUUGUCGa- -3'
miRNA:   3'- gauuCUAGCGGUCGCGuGAACGGCac -5'
24900 5' -53.8 NC_005284.1 + 53566 0.68 0.62064
Target:  5'- aUGAGcggcUGCCGGCGCGCgcccaUGCCGg- -3'
miRNA:   3'- gAUUCua--GCGGUCGCGUGa----ACGGCac -5'
24900 5' -53.8 NC_005284.1 + 34992 0.7 0.553836
Target:  5'- -aGAGAUCuGCCGcCGCGC-UGCCGUc -3'
miRNA:   3'- gaUUCUAG-CGGUcGCGUGaACGGCAc -5'
24900 5' -53.8 NC_005284.1 + 40214 0.7 0.553836
Target:  5'- -cGAGAUCGCCaAGCGCAacgcacagcGCCGa- -3'
miRNA:   3'- gaUUCUAGCGG-UCGCGUgaa------CGGCac -5'
24900 5' -53.8 NC_005284.1 + 6631 0.7 0.553836
Target:  5'- -----uUCGCCAGCGCGC--GCCGg- -3'
miRNA:   3'- gauucuAGCGGUCGCGUGaaCGGCac -5'
24900 5' -53.8 NC_005284.1 + 7881 0.71 0.499845
Target:  5'- -aAAGAUCG-CAGUGCGCgaGCCGa- -3'
miRNA:   3'- gaUUCUAGCgGUCGCGUGaaCGGCac -5'
24900 5' -53.8 NC_005284.1 + 21654 0.71 0.489319
Target:  5'- ---cGAUCGCC-GCGCACgaUGCCGc- -3'
miRNA:   3'- gauuCUAGCGGuCGCGUGa-ACGGCac -5'
24900 5' -53.8 NC_005284.1 + 8731 0.72 0.438361
Target:  5'- -gAAGAg-GCCGGaGCGCUUGCCGUc -3'
miRNA:   3'- gaUUCUagCGGUCgCGUGAACGGCAc -5'
24900 5' -53.8 NC_005284.1 + 5410 0.72 0.418842
Target:  5'- -gAGGAaCGCCu-CGCGCUUGCCGUc -3'
miRNA:   3'- gaUUCUaGCGGucGCGUGAACGGCAc -5'
24900 5' -53.8 NC_005284.1 + 5454 0.75 0.298127
Target:  5'- ---cGGUCGUC-GCGCACgcgUGCCGUGc -3'
miRNA:   3'- gauuCUAGCGGuCGCGUGa--ACGGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.