miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24901 3' -56.2 NC_005284.1 + 32793 0.66 0.701036
Target:  5'- cGGUGcGUCGgCCUGcgCGGGUUgcggGGCGg -3'
miRNA:   3'- -CCGC-UAGUgGGGCaaGCUCGAa---CCGC- -5'
24901 3' -56.2 NC_005284.1 + 44717 0.66 0.701036
Target:  5'- cGCGGUCGCCgCgCGUUCcgcucgcucacGAGCcugcgUGGCa -3'
miRNA:   3'- cCGCUAGUGG-G-GCAAG-----------CUCGa----ACCGc -5'
24901 3' -56.2 NC_005284.1 + 46562 0.66 0.701036
Target:  5'- gGGCGAUC-CgaUGUUgcCGAGCaUGGCGg -3'
miRNA:   3'- -CCGCUAGuGggGCAA--GCUCGaACCGC- -5'
24901 3' -56.2 NC_005284.1 + 52849 0.66 0.690358
Target:  5'- cGGCGucaGCCCuuCGUccUCGAGCU-GGUGc -3'
miRNA:   3'- -CCGCuagUGGG--GCA--AGCUCGAaCCGC- -5'
24901 3' -56.2 NC_005284.1 + 47784 0.66 0.679626
Target:  5'- aGGCGG-CGCUCgCGgaggCGAcgggcgagcGCUUGGCGg -3'
miRNA:   3'- -CCGCUaGUGGG-GCaa--GCU---------CGAACCGC- -5'
24901 3' -56.2 NC_005284.1 + 38552 0.66 0.66885
Target:  5'- aGGCGAggaUCAUCCCGaaagccCGAGCgagacGGCc -3'
miRNA:   3'- -CCGCU---AGUGGGGCaa----GCUCGaa---CCGc -5'
24901 3' -56.2 NC_005284.1 + 37794 0.66 0.65804
Target:  5'- cGGCGAUCGuCgCCGUgugCGcGUUcGGCGu -3'
miRNA:   3'- -CCGCUAGU-GgGGCAa--GCuCGAaCCGC- -5'
24901 3' -56.2 NC_005284.1 + 12184 0.67 0.647207
Target:  5'- cGGCuuUCAUCUCGcgaCGGGCggGGCGg -3'
miRNA:   3'- -CCGcuAGUGGGGCaa-GCUCGaaCCGC- -5'
24901 3' -56.2 NC_005284.1 + 53848 0.67 0.622256
Target:  5'- gGGUGAUCGCCCgccaGUucagcaUCGAGCacagcggccgggaugGGCGg -3'
miRNA:   3'- -CCGCUAGUGGGg---CA------AGCUCGaa-------------CCGC- -5'
24901 3' -56.2 NC_005284.1 + 19415 0.67 0.603836
Target:  5'- aGGCGugaucggCGCgCCGUUCGuuguGCaaGGCGg -3'
miRNA:   3'- -CCGCua-----GUGgGGCAAGCu---CGaaCCGC- -5'
24901 3' -56.2 NC_005284.1 + 4684 0.68 0.581181
Target:  5'- cGCGAUCGCCgCGUuacguucUCGAuGCUguucGGCu -3'
miRNA:   3'- cCGCUAGUGGgGCA-------AGCU-CGAa---CCGc -5'
24901 3' -56.2 NC_005284.1 + 45210 0.68 0.560838
Target:  5'- cGCGAUCGCCCUGc----GCuUUGGCGa -3'
miRNA:   3'- cCGCUAGUGGGGCaagcuCG-AACCGC- -5'
24901 3' -56.2 NC_005284.1 + 19030 0.69 0.529143
Target:  5'- cGGCGAUCGCCgaGggCGAua-UGGCGg -3'
miRNA:   3'- -CCGCUAGUGGggCaaGCUcgaACCGC- -5'
24901 3' -56.2 NC_005284.1 + 33539 0.69 0.477915
Target:  5'- aGGCGAagcUCACCgCCGccgCGAGCUgauaUGuGCGc -3'
miRNA:   3'- -CCGCU---AGUGG-GGCaa-GCUCGA----AC-CGC- -5'
24901 3' -56.2 NC_005284.1 + 30951 0.7 0.448376
Target:  5'- cGGCGAUCACCCaauGUaggccgccgUCG-GCUggucGGCGu -3'
miRNA:   3'- -CCGCUAGUGGGg--CA---------AGCuCGAa---CCGC- -5'
24901 3' -56.2 NC_005284.1 + 26929 0.7 0.438755
Target:  5'- cGGCGAU-GCgCCGggCGGGCgucgucUGGCGa -3'
miRNA:   3'- -CCGCUAgUGgGGCaaGCUCGa-----ACCGC- -5'
24901 3' -56.2 NC_005284.1 + 12357 0.72 0.349531
Target:  5'- cGCGAuUCGCCgCGggUGGGCUcguUGGCGg -3'
miRNA:   3'- cCGCU-AGUGGgGCaaGCUCGA---ACCGC- -5'
24901 3' -56.2 NC_005284.1 + 33150 0.73 0.287994
Target:  5'- cGGCGAUCGCacgcugCUCGgcgUCGAGCgcGGCGc -3'
miRNA:   3'- -CCGCUAGUG------GGGCa--AGCUCGaaCCGC- -5'
24901 3' -56.2 NC_005284.1 + 954 1.1 0.000803
Target:  5'- gGGCGAUCACCCCGUUCGAGCUUGGCGc -3'
miRNA:   3'- -CCGCUAGUGGGGCAAGCUCGAACCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.