miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24901 5' -55.1 NC_005284.1 + 11741 0.66 0.728389
Target:  5'- cGCGCGaaagGACgGCAcGcUGgGUUCGCCc -3'
miRNA:   3'- aCGCGUa---CUG-CGUuCuACgCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 47479 0.66 0.728389
Target:  5'- -uCGCAUgcucGACGUcggccacaccgAGGAUGCuaUCGCCg -3'
miRNA:   3'- acGCGUA----CUGCG-----------UUCUACGcgAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9238 0.66 0.728389
Target:  5'- gGCGC-UGACGCGcGcgGCGggCGgCa -3'
miRNA:   3'- aCGCGuACUGCGUuCuaCGCgaGCgG- -5'
24901 5' -55.1 NC_005284.1 + 8869 0.66 0.728389
Target:  5'- uUGCGCAgaacGACGU--GcUGCGCaUCGCg -3'
miRNA:   3'- -ACGCGUa---CUGCGuuCuACGCG-AGCGg -5'
24901 5' -55.1 NC_005284.1 + 45442 0.66 0.728389
Target:  5'- cGCGCccGuCGCuuGAUcCGaCUCGCCg -3'
miRNA:   3'- aCGCGuaCuGCGuuCUAcGC-GAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9754 0.66 0.719814
Target:  5'- aGCGCGggcggucgaggcgacGGCGCAAGcucacgucgcaacgGCGCgCGCCa -3'
miRNA:   3'- aCGCGUa--------------CUGCGUUCua------------CGCGaGCGG- -5'
24901 5' -55.1 NC_005284.1 + 17933 0.66 0.717661
Target:  5'- cGUGCAgccgaggcgGACGCGgcaaAGcaaGUGCGaUCGCCa -3'
miRNA:   3'- aCGCGUa--------CUGCGU----UC---UACGCgAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 31418 0.66 0.717661
Target:  5'- uUGCGCcaguuCGCGGGcgacGUGCGC-CGCUg -3'
miRNA:   3'- -ACGCGuacu-GCGUUC----UACGCGaGCGG- -5'
24901 5' -55.1 NC_005284.1 + 204 0.66 0.706847
Target:  5'- gGCGCggGGCauGUggGA-GCGCguugUGCCg -3'
miRNA:   3'- aCGCGuaCUG--CGuuCUaCGCGa---GCGG- -5'
24901 5' -55.1 NC_005284.1 + 47688 0.66 0.706847
Target:  5'- aUGcCGC-UGACgGCAAGGaagggcacgcGCGCUCGCg -3'
miRNA:   3'- -AC-GCGuACUG-CGUUCUa---------CGCGAGCGg -5'
24901 5' -55.1 NC_005284.1 + 37782 0.66 0.706847
Target:  5'- cUGCuGUGUGugGCu---UGCGUUgGCCa -3'
miRNA:   3'- -ACG-CGUACugCGuucuACGCGAgCGG- -5'
24901 5' -55.1 NC_005284.1 + 40651 0.66 0.706847
Target:  5'- cGuCGUAcUGACGCAcGAUGaaaUCGCCg -3'
miRNA:   3'- aC-GCGU-ACUGCGUuCUACgcgAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 12355 0.66 0.706847
Target:  5'- cGCGCGauuCGCcgcGGGUGgGCUCGUUg -3'
miRNA:   3'- aCGCGUacuGCGu--UCUACgCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 43175 0.66 0.704675
Target:  5'- cGCGCugcacgucacgcUGACGCucGGccGCGUagUCGCCg -3'
miRNA:   3'- aCGCGu-----------ACUGCGu-UCuaCGCG--AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 24924 0.66 0.695958
Target:  5'- gGCGCcgaccauCGCGAGAUGCGUcggUUGaCCg -3'
miRNA:   3'- aCGCGuacu---GCGUUCUACGCG---AGC-GG- -5'
24901 5' -55.1 NC_005284.1 + 3537 0.66 0.695958
Target:  5'- cGCGCGUGGCu-------CGCUCGCCa -3'
miRNA:   3'- aCGCGUACUGcguucuacGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 31014 0.66 0.695958
Target:  5'- cGUGCGUG-CGgAAGuUGCcgguugGCUCGCUg -3'
miRNA:   3'- aCGCGUACuGCgUUCuACG------CGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9508 0.66 0.685007
Target:  5'- aGCGUGggucGGCGCccggcGA-GCGCUCGUCg -3'
miRNA:   3'- aCGCGUa---CUGCGuu---CUaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 21826 0.66 0.685007
Target:  5'- cGUGCccGGCGCuuccaGCGC-CGCCg -3'
miRNA:   3'- aCGCGuaCUGCGuucuaCGCGaGCGG- -5'
24901 5' -55.1 NC_005284.1 + 41795 0.66 0.685007
Target:  5'- aUGUGCGcGACGCGGuuguUGuCGC-CGCCa -3'
miRNA:   3'- -ACGCGUaCUGCGUUcu--AC-GCGaGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.