miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24901 5' -55.1 NC_005284.1 + 988 1.01 0.003516
Target:  5'- cUGCGCAUGAC-CAAGAUGCGCUCGCCg -3'
miRNA:   3'- -ACGCGUACUGcGUUCUACGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 6987 0.78 0.14188
Target:  5'- cGCGUacAUGGCGCGcucGAcaugGCGCUCGCCg -3'
miRNA:   3'- aCGCG--UACUGCGUu--CUa---CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 266 0.77 0.172208
Target:  5'- cUGuCGC--GGCGCAAGAUGCGCU-GCCu -3'
miRNA:   3'- -AC-GCGuaCUGCGUUCUACGCGAgCGG- -5'
24901 5' -55.1 NC_005284.1 + 10908 0.77 0.181883
Target:  5'- aGCGCGgacgaagGGCGCGAauGAUGCGCagGCCc -3'
miRNA:   3'- aCGCGUa------CUGCGUU--CUACGCGagCGG- -5'
24901 5' -55.1 NC_005284.1 + 10126 0.76 0.208193
Target:  5'- aGCGCGgcgacGGCGC-AGAcgGCGCUCGCg -3'
miRNA:   3'- aCGCGUa----CUGCGuUCUa-CGCGAGCGg -5'
24901 5' -55.1 NC_005284.1 + 44953 0.74 0.284866
Target:  5'- cGCGUagGGCGUgcccguGAUGCGCgCGCCg -3'
miRNA:   3'- aCGCGuaCUGCGuu----CUACGCGaGCGG- -5'
24901 5' -55.1 NC_005284.1 + 26557 0.74 0.292173
Target:  5'- cGgGCAguaggUGGCcgGCGAGAgugGCGUUCGCCa -3'
miRNA:   3'- aCgCGU-----ACUG--CGUUCUa--CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 1013 0.73 0.299626
Target:  5'- gGCGCGgcUGAUGgu-GAaGCGCUCGCCu -3'
miRNA:   3'- aCGCGU--ACUGCguuCUaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 19011 0.73 0.31497
Target:  5'- gGCGUGUGGucgcUGCAGGcgGCGaUCGCCg -3'
miRNA:   3'- aCGCGUACU----GCGUUCuaCGCgAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 16295 0.73 0.322862
Target:  5'- cUGCGCAgGGCGagccGGUGcCGCUCGUCa -3'
miRNA:   3'- -ACGCGUaCUGCguu-CUAC-GCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 43474 0.73 0.330901
Target:  5'- cGCuGCcgGAUGUugucGAGcAUGCGCUCGCUu -3'
miRNA:   3'- aCG-CGuaCUGCG----UUC-UACGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 16761 0.72 0.347418
Target:  5'- gUGCGCGUG-CGCuucGGUGUGCcggCGCUa -3'
miRNA:   3'- -ACGCGUACuGCGuu-CUACGCGa--GCGG- -5'
24901 5' -55.1 NC_005284.1 + 23448 0.72 0.355894
Target:  5'- aGCGCGUGuucuGCGCGu----CGCUCGCCg -3'
miRNA:   3'- aCGCGUAC----UGCGUucuacGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 48239 0.72 0.364515
Target:  5'- gGCGCAaagacUGACGCu-GAcgGCGCgUUGCCg -3'
miRNA:   3'- aCGCGU-----ACUGCGuuCUa-CGCG-AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 38994 0.72 0.364515
Target:  5'- cGCGCuggcGACGCAAcGcAUGCGCgagUUGCCa -3'
miRNA:   3'- aCGCGua--CUGCGUU-C-UACGCG---AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 8646 0.72 0.373279
Target:  5'- gUGCGCGacggcgGGCGCAcagcGGAUgcgGCGUUUGCCu -3'
miRNA:   3'- -ACGCGUa-----CUGCGU----UCUA---CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 52056 0.72 0.373279
Target:  5'- uUGCGCAaucACGgAGGGggaGCGCUCGUCa -3'
miRNA:   3'- -ACGCGUac-UGCgUUCUa--CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9562 0.71 0.400417
Target:  5'- gGCG----GCGCAGGcaGCGCUCGCCa -3'
miRNA:   3'- aCGCguacUGCGUUCuaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 49765 0.71 0.408801
Target:  5'- cUGaCGCuUGGgGCAAGAUGCcgagaauGUUCGCCc -3'
miRNA:   3'- -AC-GCGuACUgCGUUCUACG-------CGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 4326 0.71 0.428781
Target:  5'- aGCGCAucggugacgaagUGAaauccgccgGCGAGAagGCGCUCGCUg -3'
miRNA:   3'- aCGCGU------------ACUg--------CGUUCUa-CGCGAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.