miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24901 5' -55.1 NC_005284.1 + 54375 0.7 0.438496
Target:  5'- cGUGCAagcaccgGGgGUgcGGUGCGCUCGUCg -3'
miRNA:   3'- aCGCGUa------CUgCGuuCUACGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 45009 0.7 0.438496
Target:  5'- cGCGCGccguugcGACGUGAGcuUGCGCcgUCGCCu -3'
miRNA:   3'- aCGCGUa------CUGCGUUCu-ACGCG--AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 320 0.7 0.448335
Target:  5'- cGCGCAUGACGauuGccGCGCaccgCGUCg -3'
miRNA:   3'- aCGCGUACUGCguuCuaCGCGa---GCGG- -5'
24901 5' -55.1 NC_005284.1 + 17743 0.7 0.448335
Target:  5'- gGCGCA-GGCGCAccGGcucggGCGCUgGCUg -3'
miRNA:   3'- aCGCGUaCUGCGU--UCua---CGCGAgCGG- -5'
24901 5' -55.1 NC_005284.1 + 30424 0.7 0.448335
Target:  5'- cGUGCGcGACgGCGAGGUGCuGUuucgcgagUCGCCg -3'
miRNA:   3'- aCGCGUaCUG-CGUUCUACG-CG--------AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 7422 0.7 0.465338
Target:  5'- cGCGCAUGACGCGcuucgGGAUcGCuggaaucgugaucgGCucuUCGCCc -3'
miRNA:   3'- aCGCGUACUGCGU-----UCUA-CG--------------CG---AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 17593 0.7 0.468373
Target:  5'- -aCGCAaGACGCGuuacacGGUcGCGCUCGUCa -3'
miRNA:   3'- acGCGUaCUGCGUu-----CUA-CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 50119 0.7 0.468373
Target:  5'- gGCG-AUcGCGCAcGcgGCGUUCGCCa -3'
miRNA:   3'- aCGCgUAcUGCGUuCuaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 15952 0.7 0.468373
Target:  5'- gGCGCGcGACGCcGGcccaCGUUCGCCg -3'
miRNA:   3'- aCGCGUaCUGCGuUCuac-GCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 22001 0.7 0.478563
Target:  5'- cGCGCAggccGACGCAccggcAGAggcGCGCgagCGCg -3'
miRNA:   3'- aCGCGUa---CUGCGU-----UCUa--CGCGa--GCGg -5'
24901 5' -55.1 NC_005284.1 + 20368 0.7 0.48886
Target:  5'- aGCGCAgucaauUGAuUGC-AGAUGCGUUgaCGCCg -3'
miRNA:   3'- aCGCGU------ACU-GCGuUCUACGCGA--GCGG- -5'
24901 5' -55.1 NC_005284.1 + 9702 0.69 0.499261
Target:  5'- gGCGCucgGcaacuucacgaGCGCGuAGccGCGCUCGCCc -3'
miRNA:   3'- aCGCGua-C-----------UGCGU-UCuaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 53362 0.69 0.508705
Target:  5'- aGCGCAgUGACGUAuccugcuAGcuGUGCGCggaUGCCa -3'
miRNA:   3'- aCGCGU-ACUGCGU-------UC--UACGCGa--GCGG- -5'
24901 5' -55.1 NC_005284.1 + 21631 0.69 0.509759
Target:  5'- cGCGCucGACGcCGAGcagcGUGCGaUCGCCg -3'
miRNA:   3'- aCGCGuaCUGC-GUUC----UACGCgAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 4789 0.69 0.509759
Target:  5'- cGuCGUggGGCGCGAgccuucGAUGCGCUCGaCa -3'
miRNA:   3'- aC-GCGuaCUGCGUU------CUACGCGAGCgG- -5'
24901 5' -55.1 NC_005284.1 + 18479 0.69 0.520347
Target:  5'- cGCGgGUGcGCGcCGAGAacGCGCUCGgCg -3'
miRNA:   3'- aCGCgUAC-UGC-GUUCUa-CGCGAGCgG- -5'
24901 5' -55.1 NC_005284.1 + 10653 0.69 0.520347
Target:  5'- aGCGCu--GCGCGAGGaacugGUGCgCGCCg -3'
miRNA:   3'- aCGCGuacUGCGUUCUa----CGCGaGCGG- -5'
24901 5' -55.1 NC_005284.1 + 39502 0.69 0.520347
Target:  5'- cGCGguUGGucagUGCAugugGUGCUCGCCg -3'
miRNA:   3'- aCGCguACU----GCGUucuaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 51730 0.69 0.520347
Target:  5'- aGCGCGUGuACGgaAAGAU-CGCggcgCGCCu -3'
miRNA:   3'- aCGCGUAC-UGCg-UUCUAcGCGa---GCGG- -5'
24901 5' -55.1 NC_005284.1 + 36896 0.69 0.531022
Target:  5'- aGcCGCu--GCGC-GGAUGCGCcCGCCg -3'
miRNA:   3'- aC-GCGuacUGCGuUCUACGCGaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.