miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24901 5' -55.1 NC_005284.1 + 204 0.66 0.706847
Target:  5'- gGCGCggGGCauGUggGA-GCGCguugUGCCg -3'
miRNA:   3'- aCGCGuaCUG--CGuuCUaCGCGa---GCGG- -5'
24901 5' -55.1 NC_005284.1 + 266 0.77 0.172208
Target:  5'- cUGuCGC--GGCGCAAGAUGCGCU-GCCu -3'
miRNA:   3'- -AC-GCGuaCUGCGUUCUACGCGAgCGG- -5'
24901 5' -55.1 NC_005284.1 + 320 0.7 0.448335
Target:  5'- cGCGCAUGACGauuGccGCGCaccgCGUCg -3'
miRNA:   3'- aCGCGUACUGCguuCuaCGCGa---GCGG- -5'
24901 5' -55.1 NC_005284.1 + 988 1.01 0.003516
Target:  5'- cUGCGCAUGAC-CAAGAUGCGCUCGCCg -3'
miRNA:   3'- -ACGCGUACUGcGUUCUACGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 1013 0.73 0.299626
Target:  5'- gGCGCGgcUGAUGgu-GAaGCGCUCGCCu -3'
miRNA:   3'- aCGCGU--ACUGCguuCUaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 3537 0.66 0.695958
Target:  5'- cGCGCGUGGCu-------CGCUCGCCa -3'
miRNA:   3'- aCGCGUACUGcguucuacGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 3678 0.68 0.59756
Target:  5'- gGCGCcgGGgGCAuuuucaaacagucucGAUGCGCUCaagaagagcgGCCg -3'
miRNA:   3'- aCGCGuaCUgCGUu--------------CUACGCGAG----------CGG- -5'
24901 5' -55.1 NC_005284.1 + 4326 0.71 0.428781
Target:  5'- aGCGCAucggugacgaagUGAaauccgccgGCGAGAagGCGCUCGCUg -3'
miRNA:   3'- aCGCGU------------ACUg--------CGUUCUa-CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 4789 0.69 0.509759
Target:  5'- cGuCGUggGGCGCGAgccuucGAUGCGCUCGaCa -3'
miRNA:   3'- aC-GCGuaCUGCGUU------CUACGCGAGCgG- -5'
24901 5' -55.1 NC_005284.1 + 6902 0.66 0.674004
Target:  5'- cGCGCAUaGCGCGguuGAgGUGCUCGa- -3'
miRNA:   3'- aCGCGUAcUGCGUu--CUaCGCGAGCgg -5'
24901 5' -55.1 NC_005284.1 + 6987 0.78 0.14188
Target:  5'- cGCGUacAUGGCGCGcucGAcaugGCGCUCGCCg -3'
miRNA:   3'- aCGCG--UACUGCGUu--CUa---CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 7422 0.7 0.465338
Target:  5'- cGCGCAUGACGCGcuucgGGAUcGCuggaaucgugaucgGCucuUCGCCc -3'
miRNA:   3'- aCGCGUACUGCGU-----UCUA-CG--------------CG---AGCGG- -5'
24901 5' -55.1 NC_005284.1 + 7702 0.67 0.640798
Target:  5'- gUGCGCGUGA-GC--GGUGCGCcgaagcucgUGCCg -3'
miRNA:   3'- -ACGCGUACUgCGuuCUACGCGa--------GCGG- -5'
24901 5' -55.1 NC_005284.1 + 8646 0.72 0.373279
Target:  5'- gUGCGCGacggcgGGCGCAcagcGGAUgcgGCGUUUGCCu -3'
miRNA:   3'- -ACGCGUa-----CUGCGU----UCUA---CGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 8869 0.66 0.728389
Target:  5'- uUGCGCAgaacGACGU--GcUGCGCaUCGCg -3'
miRNA:   3'- -ACGCGUa---CUGCGuuCuACGCG-AGCGg -5'
24901 5' -55.1 NC_005284.1 + 9238 0.66 0.728389
Target:  5'- gGCGC-UGACGCGcGcgGCGggCGgCa -3'
miRNA:   3'- aCGCGuACUGCGUuCuaCGCgaGCgG- -5'
24901 5' -55.1 NC_005284.1 + 9508 0.66 0.685007
Target:  5'- aGCGUGggucGGCGCccggcGA-GCGCUCGUCg -3'
miRNA:   3'- aCGCGUa---CUGCGuu---CUaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9562 0.71 0.400417
Target:  5'- gGCG----GCGCAGGcaGCGCUCGCCa -3'
miRNA:   3'- aCGCguacUGCGUUCuaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9702 0.69 0.499261
Target:  5'- gGCGCucgGcaacuucacgaGCGCGuAGccGCGCUCGCCc -3'
miRNA:   3'- aCGCGua-C-----------UGCGU-UCuaCGCGAGCGG- -5'
24901 5' -55.1 NC_005284.1 + 9754 0.66 0.719814
Target:  5'- aGCGCGggcggucgaggcgacGGCGCAAGcucacgucgcaacgGCGCgCGCCa -3'
miRNA:   3'- aCGCGUa--------------CUGCGUUCua------------CGCGaGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.