miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24902 3' -54.4 NC_005284.1 + 46623 0.67 0.677049
Target:  5'- gGGCGUucaGuGUCugcggaCGUAGUGGCGACAc -3'
miRNA:   3'- aUUGCA---C-CAGuug---GCGUCACCGCUGU- -5'
24902 3' -54.4 NC_005284.1 + 19014 0.68 0.621267
Target:  5'- --gUGUGGUC-GCUGCAGgcGGCGAUc -3'
miRNA:   3'- auuGCACCAGuUGGCGUCa-CCGCUGu -5'
24902 3' -54.4 NC_005284.1 + 8096 0.68 0.59895
Target:  5'- cGACGaug-CAACCGCGGUcgcGGCGGCGu -3'
miRNA:   3'- aUUGCaccaGUUGGCGUCA---CCGCUGU- -5'
24902 3' -54.4 NC_005284.1 + 26399 0.68 0.58783
Target:  5'- cAGCGUGG-CugcGCCGCuucgaGGUgGGCGACGa -3'
miRNA:   3'- aUUGCACCaGu--UGGCG-----UCA-CCGCUGU- -5'
24902 3' -54.4 NC_005284.1 + 32982 0.69 0.565715
Target:  5'- gGGCGgcGGUCAcucgcuCCGCAGcgGGCGAUg -3'
miRNA:   3'- aUUGCa-CCAGUu-----GGCGUCa-CCGCUGu -5'
24902 3' -54.4 NC_005284.1 + 13540 0.69 0.554736
Target:  5'- cGACGaGGUag-UCGCAGUGuGCGACAa -3'
miRNA:   3'- aUUGCaCCAguuGGCGUCAC-CGCUGU- -5'
24902 3' -54.4 NC_005284.1 + 40458 0.69 0.554736
Target:  5'- --gUGUGGgagggcaaguUCGACCGCGuGUGGCGAa- -3'
miRNA:   3'- auuGCACC----------AGUUGGCGU-CACCGCUgu -5'
24902 3' -54.4 NC_005284.1 + 14569 0.7 0.49045
Target:  5'- gGACGUGGUCuGGCCGC---GGCGAgGg -3'
miRNA:   3'- aUUGCACCAG-UUGGCGucaCCGCUgU- -5'
24902 3' -54.4 NC_005284.1 + 45151 0.74 0.315097
Target:  5'- aGGCGUGGUCGA-CGCAc-GGCGACGu -3'
miRNA:   3'- aUUGCACCAGUUgGCGUcaCCGCUGU- -5'
24902 3' -54.4 NC_005284.1 + 21368 0.76 0.225049
Target:  5'- gGACaacGGUCGGCCGCAGUgGGUGACu -3'
miRNA:   3'- aUUGca-CCAGUUGGCGUCA-CCGCUGu -5'
24902 3' -54.4 NC_005284.1 + 12273 0.77 0.191406
Target:  5'- --uCGUGGUCcgcGCCGCAGUGGUGucGCAg -3'
miRNA:   3'- auuGCACCAGu--UGGCGUCACCGC--UGU- -5'
24902 3' -54.4 NC_005284.1 + 200 1.07 0.00141
Target:  5'- aUAACGUGGUCAACCGCAGUGGCGACAg -3'
miRNA:   3'- -AUUGCACCAGUUGGCGUCACCGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.