Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24902 | 5' | -52.2 | NC_005284.1 | + | 38898 | 0.66 | 0.862374 |
Target: 5'- gUUGUgaUUGCccGCAGGGCgGGCGGGu -3' miRNA: 3'- gGACG--AACGuuUGUCCCGaCUGUCUc -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 19538 | 0.67 | 0.817219 |
Target: 5'- --cGCgggGC-GGCAGGGUUGGCGGuGg -3' miRNA: 3'- ggaCGaa-CGuUUGUCCCGACUGUCuC- -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 48982 | 0.67 | 0.797635 |
Target: 5'- gCUGCgcgGCuGGACGGGGCUGuuccCGGuGa -3' miRNA: 3'- gGACGaa-CG-UUUGUCCCGACu---GUCuC- -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 49692 | 0.68 | 0.766907 |
Target: 5'- aCUGCUUGC-AACAGuGCcaGACGGAu -3' miRNA: 3'- gGACGAACGuUUGUCcCGa-CUGUCUc -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 193 | 0.68 | 0.73485 |
Target: 5'- aUUGUcgGCGAggcGCGGGGCaUGugGGAGc -3' miRNA: 3'- gGACGaaCGUU---UGUCCCG-ACugUCUC- -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 4369 | 0.68 | 0.723928 |
Target: 5'- --cGCUgaaGCAAAgAGGGCUGGCGa-- -3' miRNA: 3'- ggaCGAa--CGUUUgUCCCGACUGUcuc -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 39284 | 0.7 | 0.600043 |
Target: 5'- uCCUGUa-GCGGGCGGGGUUGGuCAGGc -3' miRNA: 3'- -GGACGaaCGUUUGUCCCGACU-GUCUc -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 14001 | 0.71 | 0.566262 |
Target: 5'- gCUGCgcgGUAAGCGGGGCgUGACGu-- -3' miRNA: 3'- gGACGaa-CGUUUGUCCCG-ACUGUcuc -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 54560 | 0.81 | 0.163353 |
Target: 5'- cCCUGUUUGCAAGCAGGGCgcgUGACu--- -3' miRNA: 3'- -GGACGAACGUUUGUCCCG---ACUGucuc -5' |
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24902 | 5' | -52.2 | NC_005284.1 | + | 235 | 1.12 | 0.001092 |
Target: 5'- cCCUGCUUGCAAACAGGGCUGACAGAGg -3' miRNA: 3'- -GGACGAACGUUUGUCCCGACUGUCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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