miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24903 3' -56.8 NC_005284.1 + 15899 0.66 0.648605
Target:  5'- gCGGUGCGcgCGCUAUCgGUGCUgauucCCGg-- -3'
miRNA:   3'- -GCCGCGCa-GCGGUAG-CACGA-----GGUaac -5'
24903 3' -56.8 NC_005284.1 + 27931 0.66 0.637722
Target:  5'- uCGGCGUugacgugaucaUCGCCAUCGUGUgcgucucucuUCCAUc- -3'
miRNA:   3'- -GCCGCGc----------AGCGGUAGCACG----------AGGUAac -5'
24903 3' -56.8 NC_005284.1 + 48258 0.67 0.594232
Target:  5'- aCGGCGCGUUGCCGUgCGgGCa------ -3'
miRNA:   3'- -GCCGCGCAGCGGUA-GCaCGagguaac -5'
24903 3' -56.8 NC_005284.1 + 54148 0.67 0.594232
Target:  5'- uGGcCGCGUCGUgauCGUUGUGCUggCCGUc- -3'
miRNA:   3'- gCC-GCGCAGCG---GUAGCACGA--GGUAac -5'
24903 3' -56.8 NC_005284.1 + 16178 0.67 0.576946
Target:  5'- uCGGCGCGUCGauggcgcugggcggCAUCGUGCagaugcucagUCCGc-- -3'
miRNA:   3'- -GCCGCGCAGCg-------------GUAGCACG----------AGGUaac -5'
24903 3' -56.8 NC_005284.1 + 10558 0.67 0.561912
Target:  5'- aCGGCGCaUCGCCAaacgUCG-GCaCCAUg- -3'
miRNA:   3'- -GCCGCGcAGCGGU----AGCaCGaGGUAac -5'
24903 3' -56.8 NC_005284.1 + 45565 0.68 0.519623
Target:  5'- uGGCGCGUCGCCcgCGcaCUCgGc-- -3'
miRNA:   3'- gCCGCGCAGCGGuaGCacGAGgUaac -5'
24903 3' -56.8 NC_005284.1 + 1252 0.68 0.498945
Target:  5'- -aGUGCGgCGCUAUCGUGCUCg---- -3'
miRNA:   3'- gcCGCGCaGCGGUAGCACGAGguaac -5'
24903 3' -56.8 NC_005284.1 + 9432 0.69 0.448977
Target:  5'- uCGGCGUGUCGCUcgCGgccggGCggauugCCGUg- -3'
miRNA:   3'- -GCCGCGCAGCGGuaGCa----CGa-----GGUAac -5'
24903 3' -56.8 NC_005284.1 + 35127 0.74 0.229101
Target:  5'- gCGGCGUGUucugcggaugugCGCCcgGUCG-GCUCCGUUGu -3'
miRNA:   3'- -GCCGCGCA------------GCGG--UAGCaCGAGGUAAC- -5'
24903 3' -56.8 NC_005284.1 + 1138 1.08 0.00081
Target:  5'- aCGGCGCGUCGCCAUCGUGCUCCAUUGu -3'
miRNA:   3'- -GCCGCGCAGCGGUAGCACGAGGUAAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.