miRNA display CGI


Results 21 - 40 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24903 5' -56.7 NC_005284.1 + 26650 0.67 0.533937
Target:  5'- cUGCUACGuGaUGCGAUAGaacgccucuuCGCCGCGCUc -3'
miRNA:   3'- -AUGGUGCuC-GUGCUAUC----------GCGGCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 9838 0.67 0.527542
Target:  5'- cAUCACGGGCacgcccuacgcgGCGAUcaucgcucgcgagacGGCaGCCGCACa -3'
miRNA:   3'- aUGGUGCUCG------------UGCUA---------------UCG-CGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 21658 0.67 0.512734
Target:  5'- cGCCGC--GCACGAUGcCGCCGCGu- -3'
miRNA:   3'- aUGGUGcuCGUGCUAUcGCGGCGUga -5'
24903 5' -56.7 NC_005284.1 + 14600 0.67 0.512734
Target:  5'- cACC-CGcAGCgucgGCGAUGGCuGCUGCGCg -3'
miRNA:   3'- aUGGuGC-UCG----UGCUAUCG-CGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 30361 0.68 0.502263
Target:  5'- gGCgAuCGAGCGCGAgGGCGauGCGCUc -3'
miRNA:   3'- aUGgU-GCUCGUGCUaUCGCggCGUGA- -5'
24903 5' -56.7 NC_005284.1 + 28014 0.68 0.491886
Target:  5'- -cCCGCGGGCgacAUGGUugcAGCGCCaGCACc -3'
miRNA:   3'- auGGUGCUCG---UGCUA---UCGCGG-CGUGa -5'
24903 5' -56.7 NC_005284.1 + 7893 0.68 0.491886
Target:  5'- --gCGCGAGCcgACGGUcGGCGaCCGCAUg -3'
miRNA:   3'- augGUGCUCG--UGCUA-UCGC-GGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 10214 0.68 0.491886
Target:  5'- gUACgCGCGAGCGCcgucuGCGCCGuCGCc -3'
miRNA:   3'- -AUG-GUGCUCGUGcuau-CGCGGC-GUGa -5'
24903 5' -56.7 NC_005284.1 + 45866 0.68 0.481609
Target:  5'- uUGCUACgugGAGCGCGAagccacuGCuGCCGCGCa -3'
miRNA:   3'- -AUGGUG---CUCGUGCUau-----CG-CGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 21908 0.68 0.481609
Target:  5'- cGCCgGCGGcGCugGA-AGCGCCGgGCa -3'
miRNA:   3'- aUGG-UGCU-CGugCUaUCGCGGCgUGa -5'
24903 5' -56.7 NC_005284.1 + 52607 0.68 0.461375
Target:  5'- gACCAaaGAGCGCGGgcugaauuuGcCGCCGCACg -3'
miRNA:   3'- aUGGUg-CUCGUGCUau-------C-GCGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 45558 0.68 0.461375
Target:  5'- cGCCGCGuGGCGCGuc-GC-CCGCGCa -3'
miRNA:   3'- aUGGUGC-UCGUGCuauCGcGGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 47805 0.68 0.461375
Target:  5'- gUACCGcCGAGCACGGccuucuGCGCacgcgaGCGCg -3'
miRNA:   3'- -AUGGU-GCUCGUGCUau----CGCGg-----CGUGa -5'
24903 5' -56.7 NC_005284.1 + 17820 0.68 0.451428
Target:  5'- cGCC-CGAGC-CGGU-GCGCCuGCGCc -3'
miRNA:   3'- aUGGuGCUCGuGCUAuCGCGG-CGUGa -5'
24903 5' -56.7 NC_005284.1 + 31728 0.69 0.4416
Target:  5'- aUACCAUGcucgcucccgcAGCcaGCGAUAGCGCUcuGCGCa -3'
miRNA:   3'- -AUGGUGC-----------UCG--UGCUAUCGCGG--CGUGa -5'
24903 5' -56.7 NC_005284.1 + 4483 0.69 0.431893
Target:  5'- gGCuCGCG-GCgGCGGUAGCGCCGaACUc -3'
miRNA:   3'- aUG-GUGCuCG-UGCUAUCGCGGCgUGA- -5'
24903 5' -56.7 NC_005284.1 + 19798 0.69 0.412862
Target:  5'- -uCCGuCGAGCAUGAggcGCGCCGCu-- -3'
miRNA:   3'- auGGU-GCUCGUGCUau-CGCGGCGuga -5'
24903 5' -56.7 NC_005284.1 + 9660 0.7 0.394356
Target:  5'- aGCuCGCGGGCAUGcgAGCGauGCGCg -3'
miRNA:   3'- aUG-GUGCUCGUGCuaUCGCggCGUGa -5'
24903 5' -56.7 NC_005284.1 + 1229 0.7 0.385307
Target:  5'- gUACuCAUcgacaaugGAGCACGAUGGCGaCGCGCc -3'
miRNA:   3'- -AUG-GUG--------CUCGUGCUAUCGCgGCGUGa -5'
24903 5' -56.7 NC_005284.1 + 32636 0.7 0.376397
Target:  5'- cGCCGCucGUuCGAUAGCGCCaCGCUg -3'
miRNA:   3'- aUGGUGcuCGuGCUAUCGCGGcGUGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.