miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24904 3' -52.3 NC_005284.1 + 21334 0.67 0.804309
Target:  5'- -aCUGGCgGGGCGCGuGUcGCGCG-AUCa -3'
miRNA:   3'- uaGGCCG-UUUGCGCuUA-CGCGCuUAG- -5'
24904 3' -52.3 NC_005284.1 + 21750 0.67 0.803321
Target:  5'- --aCGGCGgccaccgccGACGCGGcggcaucGUGCGCGGcgAUCg -3'
miRNA:   3'- uagGCCGU---------UUGCGCU-------UACGCGCU--UAG- -5'
24904 3' -52.3 NC_005284.1 + 15443 0.67 0.802331
Target:  5'- cGUCCauGGCGugcacgacugcuACGCGAucGUGCGCGAc-- -3'
miRNA:   3'- -UAGG--CCGUu-----------UGCGCU--UACGCGCUuag -5'
24904 3' -52.3 NC_005284.1 + 37197 0.67 0.784195
Target:  5'- -aCgGGCGucuaccugcGCGCGAucGUGCGCGAcgCc -3'
miRNA:   3'- uaGgCCGUu--------UGCGCU--UACGCGCUuaG- -5'
24904 3' -52.3 NC_005284.1 + 26362 0.67 0.784195
Target:  5'- -gCCGGC--GCGCcGGUcuacaacacGCGCGAAUCa -3'
miRNA:   3'- uaGGCCGuuUGCGcUUA---------CGCGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 54459 0.67 0.773879
Target:  5'- aGUCCGacGCGGuGCGCGGcaaucgucAUGCGCGAGg- -3'
miRNA:   3'- -UAGGC--CGUU-UGCGCU--------UACGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 6406 0.67 0.773879
Target:  5'- cAUCgCGGCGAAauCGAAUGCGCa---- -3'
miRNA:   3'- -UAG-GCCGUUUgcGCUUACGCGcuuag -5'
24904 3' -52.3 NC_005284.1 + 16021 0.67 0.771796
Target:  5'- cAUCCGGuCGGGCGCGAcgagauccgcauUGCGCcgguAAUCg -3'
miRNA:   3'- -UAGGCC-GUUUGCGCUu-----------ACGCGc---UUAG- -5'
24904 3' -52.3 NC_005284.1 + 4982 0.67 0.760236
Target:  5'- -gCCGGCGcaucgucgagaucuGACGCGAcgccuugaacagAUGUGCG-AUCg -3'
miRNA:   3'- uaGGCCGU--------------UUGCGCU------------UACGCGCuUAG- -5'
24904 3' -52.3 NC_005284.1 + 27674 0.68 0.752789
Target:  5'- -aCgGGCcGGCGUGGc-GCGCGggUCg -3'
miRNA:   3'- uaGgCCGuUUGCGCUuaCGCGCuuAG- -5'
24904 3' -52.3 NC_005284.1 + 19461 0.68 0.742041
Target:  5'- uUgCGGCAGGCGCuGAucgGUGCGggcUGGAUCa -3'
miRNA:   3'- uAgGCCGUUUGCG-CU---UACGC---GCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 12423 0.68 0.742041
Target:  5'- --gCGGCGAaucGCGCGAA-GC-CGGAUCg -3'
miRNA:   3'- uagGCCGUU---UGCGCUUaCGcGCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 11020 0.68 0.742041
Target:  5'- cGUCCGGCGAcgaggccggccAUGCGGGccUGCGC--AUCa -3'
miRNA:   3'- -UAGGCCGUU-----------UGCGCUU--ACGCGcuUAG- -5'
24904 3' -52.3 NC_005284.1 + 9362 0.68 0.731175
Target:  5'- -aCgGGCGcgAGCGCGAGgcuUGCGCaggGGAUCa -3'
miRNA:   3'- uaGgCCGU--UUGCGCUU---ACGCG---CUUAG- -5'
24904 3' -52.3 NC_005284.1 + 51253 0.68 0.731175
Target:  5'- uUCUGGCGAGCGagccacGCGCGAAg- -3'
miRNA:   3'- uAGGCCGUUUGCgcuua-CGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 33125 0.68 0.731175
Target:  5'- --aCGGCGAugGUGugugccgccAGUGCGCGGAa- -3'
miRNA:   3'- uagGCCGUUugCGC---------UUACGCGCUUag -5'
24904 3' -52.3 NC_005284.1 + 11327 0.68 0.730082
Target:  5'- cAUCCGGCAGcggauCGCGcAAcUGCGCGucgaggcGGUCg -3'
miRNA:   3'- -UAGGCCGUUu----GCGC-UU-ACGCGC-------UUAG- -5'
24904 3' -52.3 NC_005284.1 + 42247 0.68 0.720202
Target:  5'- uUCCcGCAGACgagcguuuggGCGAGUGUGCGccGGUCg -3'
miRNA:   3'- uAGGcCGUUUG----------CGCUUACGCGC--UUAG- -5'
24904 3' -52.3 NC_005284.1 + 25657 0.68 0.709136
Target:  5'- -gUCGGCAAccgccGCGCGGAcgGCG-GGAUCg -3'
miRNA:   3'- uaGGCCGUU-----UGCGCUUa-CGCgCUUAG- -5'
24904 3' -52.3 NC_005284.1 + 9484 0.68 0.709136
Target:  5'- aGUCgCGGCGAcgcagGCgGCGAcaGCGUGggUCg -3'
miRNA:   3'- -UAG-GCCGUU-----UG-CGCUuaCGCGCuuAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.