miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24904 5' -53 NC_005284.1 + 18569 0.66 0.833909
Target:  5'- --cGUCGGUCguGUCGCuGacuGCGGCGGGc -3'
miRNA:   3'- cuuUAGCUAG--UAGCG-Cg--UGCCGCCUa -5'
24904 5' -53 NC_005284.1 + 30493 0.66 0.833909
Target:  5'- ---cUCGc-CGUCGCGCAC-GCGGAc -3'
miRNA:   3'- cuuuAGCuaGUAGCGCGUGcCGCCUa -5'
24904 5' -53 NC_005284.1 + 54723 0.66 0.833909
Target:  5'- --cGUCcGUCGUUGCccGCcCGGCGGAUg -3'
miRNA:   3'- cuuUAGcUAGUAGCG--CGuGCCGCCUA- -5'
24904 5' -53 NC_005284.1 + 6918 0.66 0.81521
Target:  5'- -cGAUCGAUCGcgCGCGCcaacuCGGUGcGAa -3'
miRNA:   3'- cuUUAGCUAGUa-GCGCGu----GCCGC-CUa -5'
24904 5' -53 NC_005284.1 + 19039 0.66 0.81521
Target:  5'- uAGAUCGuugCGUCGCcgGCcauCGGCGGGg -3'
miRNA:   3'- cUUUAGCua-GUAGCG--CGu--GCCGCCUa -5'
24904 5' -53 NC_005284.1 + 19420 0.66 0.81521
Target:  5'- -uGAUCGGcgcgccguUCGUUGUGCAaGGCGGGc -3'
miRNA:   3'- cuUUAGCU--------AGUAGCGCGUgCCGCCUa -5'
24904 5' -53 NC_005284.1 + 14118 0.66 0.806527
Target:  5'- gGAGAUCGAugaggacggcgauuUCAUCGUGCgucaguacgacgagaGCGGCaaGGAg -3'
miRNA:   3'- -CUUUAGCU--------------AGUAGCGCG---------------UGCCG--CCUa -5'
24904 5' -53 NC_005284.1 + 6855 0.66 0.804576
Target:  5'- -cGAUCGAUCGU-GUGCucggaggGCGGCGGu- -3'
miRNA:   3'- cuUUAGCUAGUAgCGCG-------UGCCGCCua -5'
24904 5' -53 NC_005284.1 + 12424 0.66 0.795705
Target:  5'- cGGGAucUCGGUCAgCGCGCcaguuucgaucgAgGGCGGAUc -3'
miRNA:   3'- -CUUU--AGCUAGUaGCGCG------------UgCCGCCUA- -5'
24904 5' -53 NC_005284.1 + 40259 0.67 0.775484
Target:  5'- cGGAGUUGGUCG-CGaCGCACguGGCGGu- -3'
miRNA:   3'- -CUUUAGCUAGUaGC-GCGUG--CCGCCua -5'
24904 5' -53 NC_005284.1 + 25659 0.67 0.765134
Target:  5'- -cAGUCGGcaaccgCcgCGCGgACGGCGGGa -3'
miRNA:   3'- cuUUAGCUa-----GuaGCGCgUGCCGCCUa -5'
24904 5' -53 NC_005284.1 + 17494 0.67 0.744017
Target:  5'- cGGGUCGGUgGUCGCGU-CGGCcGAUa -3'
miRNA:   3'- cUUUAGCUAgUAGCGCGuGCCGcCUA- -5'
24904 5' -53 NC_005284.1 + 25571 0.67 0.733274
Target:  5'- ---uUCGAUCccgccGUC-CGCGCGGCGGu- -3'
miRNA:   3'- cuuuAGCUAG-----UAGcGCGUGCCGCCua -5'
24904 5' -53 NC_005284.1 + 32327 0.67 0.73003
Target:  5'- -----aGAUCGUCGCGCaggcgaaaggauucACGcGCGGAa -3'
miRNA:   3'- cuuuagCUAGUAGCGCG--------------UGC-CGCCUa -5'
24904 5' -53 NC_005284.1 + 27574 0.68 0.689363
Target:  5'- --cAUCGAUCAUCGC-CACcGUGGGc -3'
miRNA:   3'- cuuUAGCUAGUAGCGcGUGcCGCCUa -5'
24904 5' -53 NC_005284.1 + 21736 0.69 0.65578
Target:  5'- cGAcgCGGcggCAUCGUGCGCGGCGa-- -3'
miRNA:   3'- cUUuaGCUa--GUAGCGCGUGCCGCcua -5'
24904 5' -53 NC_005284.1 + 51750 0.7 0.57711
Target:  5'- cGAGAUCgcgaaagcuGAUCGUCGCGCGC-GCGuGAUu -3'
miRNA:   3'- -CUUUAG---------CUAGUAGCGCGUGcCGC-CUA- -5'
24904 5' -53 NC_005284.1 + 23587 0.7 0.565986
Target:  5'- cGGGUCGAgcgguUCAUCGa-CGCGGCGGGUu -3'
miRNA:   3'- cUUUAGCU-----AGUAGCgcGUGCCGCCUA- -5'
24904 5' -53 NC_005284.1 + 30411 0.71 0.522132
Target:  5'- --uGUCGAUCGUCcgcguGCGCgACGGCGaGGUg -3'
miRNA:   3'- cuuUAGCUAGUAG-----CGCG-UGCCGC-CUA- -5'
24904 5' -53 NC_005284.1 + 49414 0.72 0.459057
Target:  5'- ---uUCGGUCGUCGCGCACGcGUGc-- -3'
miRNA:   3'- cuuuAGCUAGUAGCGCGUGC-CGCcua -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.