Results 21 - 40 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24905 | 3' | -49.9 | NC_005284.1 | + | 30306 | 0.7 | 0.773879 |
Target: 5'- uGAGGCCGGCUaugCuCGAGCGAuucacguacCGCGGc -3' miRNA: 3'- gCUUUGGCCGAa--GuGCUUGUU---------GCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 16753 | 0.7 | 0.804309 |
Target: 5'- cCGAcGCCGGCcUCACGcucGACGGC-CGGa -3' miRNA: 3'- -GCUuUGGCCGaAGUGC---UUGUUGcGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 9993 | 0.69 | 0.851029 |
Target: 5'- cCGcuGCUGcGCgagCGCGAGCGACGCu- -3' miRNA: 3'- -GCuuUGGC-CGaa-GUGCUUGUUGCGuc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10904 | 0.69 | 0.851029 |
Target: 5'- aCGAAGCgCGGaCgaagggCGCGAAUgauGCGCAGg -3' miRNA: 3'- -GCUUUG-GCC-Gaa----GUGCUUGu--UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 43480 | 0.69 | 0.859677 |
Target: 5'- aGAuccGACCGGCUacugUCGCGcuuuucCAGCGCAu -3' miRNA: 3'- gCU---UUGGCCGA----AGUGCuu----GUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 45166 | 0.69 | 0.842136 |
Target: 5'- aCGgcGCuCGGCaacUUCACGAGC-GCGUAGc -3' miRNA: 3'- -GCuuUG-GCCG---AAGUGCUUGuUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 12216 | 0.69 | 0.851029 |
Target: 5'- gGGGACCgGGCacgucCACGAGCGACaGCAu -3' miRNA: 3'- gCUUUGG-CCGaa---GUGCUUGUUG-CGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 11143 | 0.68 | 0.891652 |
Target: 5'- aGAAAuUCGGCUUCAau-GCuGACGCAGc -3' miRNA: 3'- gCUUU-GGCCGAAGUgcuUG-UUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 49386 | 0.68 | 0.884065 |
Target: 5'- -cGAGCUGGCgcgccgCACGGGCAA-GCAGc -3' miRNA: 3'- gcUUUGGCCGaa----GUGCUUGUUgCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 21915 | 0.68 | 0.898957 |
Target: 5'- gCGucGCCGGCg--ACGAuCAGCGCGa -3' miRNA: 3'- -GCuuUGGCCGaagUGCUuGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 33884 | 0.68 | 0.898957 |
Target: 5'- gCGu-GCgGGCgaUUACGAACGGCGCGa -3' miRNA: 3'- -GCuuUGgCCGa-AGUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 40265 | 0.68 | 0.868071 |
Target: 5'- gGAcGCCGGaguuggUCGCGAcgcACGugGCGGu -3' miRNA: 3'- gCUuUGGCCga----AGUGCU---UGUugCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 5764 | 0.67 | 0.925283 |
Target: 5'- gCGAAuCCGGCgggucaaccUCGCGAAUAAggccguucacuCGCAGu -3' miRNA: 3'- -GCUUuGGCCGa--------AGUGCUUGUU-----------GCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 54865 | 0.67 | 0.925283 |
Target: 5'- -GAAGCgGGCggUCcCGAagGCAGCGCc- -3' miRNA: 3'- gCUUUGgCCGa-AGuGCU--UGUUGCGuc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 47639 | 0.67 | 0.93113 |
Target: 5'- gCGAAGCUGucGCccgACGAGCAACGCGc -3' miRNA: 3'- -GCUUUGGC--CGaagUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 45648 | 0.67 | 0.912705 |
Target: 5'- uCGAuAGCCGaGUg-CGCGGGCGACGCGc -3' miRNA: 3'- -GCU-UUGGC-CGaaGUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 2509 | 0.67 | 0.908703 |
Target: 5'- gCGAAgcaacACCGGCUguaCACGGuCAuccauucucagccaaACGCAGa -3' miRNA: 3'- -GCUU-----UGGCCGAa--GUGCUuGU---------------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 29205 | 0.67 | 0.919142 |
Target: 5'- aCGugcGuuGGCUUCACGucuGCGACGUu- -3' miRNA: 3'- -GCuu-UggCCGAAGUGCu--UGUUGCGuc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 35971 | 0.67 | 0.925283 |
Target: 5'- uGAuGCUcGCUUCGCGAACAAUcaGCGu -3' miRNA: 3'- gCUuUGGcCGAAGUGCUUGUUG--CGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 14055 | 0.67 | 0.93113 |
Target: 5'- gCGGcaGGCUGGCgucaUCGCGAACGAgUGguGg -3' miRNA: 3'- -GCU--UUGGCCGa---AGUGCUUGUU-GCguC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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