Results 41 - 58 of 58 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24905 | 3' | -49.9 | NC_005284.1 | + | 12216 | 0.69 | 0.851029 |
Target: 5'- gGGGACCgGGCacgucCACGAGCGACaGCAu -3' miRNA: 3'- gCUUUGG-CCGaa---GUGCUUGUUG-CGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 11143 | 0.68 | 0.891652 |
Target: 5'- aGAAAuUCGGCUUCAau-GCuGACGCAGc -3' miRNA: 3'- gCUUU-GGCCGAAGUgcuUG-UUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 11011 | 0.74 | 0.584718 |
Target: 5'- aCGAGGCCGGCcaUGCGGGCcuGCGCAu -3' miRNA: 3'- -GCUUUGGCCGaaGUGCUUGu-UGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10904 | 0.69 | 0.851029 |
Target: 5'- aCGAAGCgCGGaCgaagggCGCGAAUgauGCGCAGg -3' miRNA: 3'- -GCUUUG-GCC-Gaa----GUGCUUGu--UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10443 | 0.72 | 0.69799 |
Target: 5'- uCGGAAuUUGGCgaCGCGGGCGGCGCAa -3' miRNA: 3'- -GCUUU-GGCCGaaGUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10396 | 0.74 | 0.562242 |
Target: 5'- aCGAAGCaagaGGCgUCGCGGGCGgccgaugacGCGCAGu -3' miRNA: 3'- -GCUUUGg---CCGaAGUGCUUGU---------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10259 | 0.73 | 0.642613 |
Target: 5'- cCGcGAACUGGCUgcuguuucgcgacaaCGCGAGCAGCGCGa -3' miRNA: 3'- -GC-UUUGGCCGAa--------------GUGCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 10109 | 0.67 | 0.912705 |
Target: 5'- uGAAGaCGGCgaccgaaagCGCGGcgACGGCGCAGa -3' miRNA: 3'- gCUUUgGCCGaa-------GUGCU--UGUUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 9993 | 0.69 | 0.851029 |
Target: 5'- cCGcuGCUGcGCgagCGCGAGCGACGCu- -3' miRNA: 3'- -GCuuUGGC-CGaa-GUGCUUGUUGCGuc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 9823 | 0.74 | 0.55109 |
Target: 5'- gGAAAUCGGCgcgcgcaUCACGGGCAcgcccuACGCGGc -3' miRNA: 3'- gCUUUGGCCGa------AGUGCUUGU------UGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 9426 | 0.66 | 0.955973 |
Target: 5'- uGAAACuCGGCgugUCGCucGCGGCcggGCGGa -3' miRNA: 3'- gCUUUG-GCCGa--AGUGcuUGUUG---CGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 7801 | 0.71 | 0.731175 |
Target: 5'- aCGccGCCGGCggcggCACGAGCuucGGCGCAc -3' miRNA: 3'- -GCuuUGGCCGaa---GUGCUUG---UUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 6701 | 0.66 | 0.941938 |
Target: 5'- aCGAAggGCaaGGCUgauUCGcCGAACAACGCGu -3' miRNA: 3'- -GCUU--UGg-CCGA---AGU-GCUUGUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 5764 | 0.67 | 0.925283 |
Target: 5'- gCGAAuCCGGCgggucaaccUCGCGAAUAAggccguucacuCGCAGu -3' miRNA: 3'- -GCUUuGGCCGa--------AGUGCUUGUU-----------GCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 4847 | 0.7 | 0.814083 |
Target: 5'- uGAAGCCGGUUUCgACGGuguacuCGAUGCu- -3' miRNA: 3'- gCUUUGGCCGAAG-UGCUu-----GUUGCGuc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 4779 | 1.09 | 0.004036 |
Target: 5'- uCGAAACCGGCUUCACGAACAACGCAGc -3' miRNA: 3'- -GCUUUGGCCGAAGUGCUUGUUGCGUC- -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 3844 | 0.66 | 0.95158 |
Target: 5'- uGAGGCCGGCc-CAUGAuccgauCGGCGUAu -3' miRNA: 3'- gCUUUGGCCGaaGUGCUu-----GUUGCGUc -5' |
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24905 | 3' | -49.9 | NC_005284.1 | + | 2509 | 0.67 | 0.908703 |
Target: 5'- gCGAAgcaacACCGGCUguaCACGGuCAuccauucucagccaaACGCAGa -3' miRNA: 3'- -GCUU-----UGGCCGAa--GUGCUuGU---------------UGCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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