miRNA display CGI


Results 41 - 58 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 3' -49.9 NC_005284.1 + 10259 0.73 0.642613
Target:  5'- cCGcGAACUGGCUgcuguuucgcgacaaCGCGAGCAGCGCGa -3'
miRNA:   3'- -GC-UUUGGCCGAa--------------GUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 10396 0.74 0.562242
Target:  5'- aCGAAGCaagaGGCgUCGCGGGCGgccgaugacGCGCAGu -3'
miRNA:   3'- -GCUUUGg---CCGaAGUGCUUGU---------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 9823 0.74 0.55109
Target:  5'- gGAAAUCGGCgcgcgcaUCACGGGCAcgcccuACGCGGc -3'
miRNA:   3'- gCUUUGGCCGa------AGUGCUUGU------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 49386 0.68 0.884065
Target:  5'- -cGAGCUGGCgcgccgCACGGGCAA-GCAGc -3'
miRNA:   3'- gcUUUGGCCGaa----GUGCUUGUUgCGUC- -5'
24905 3' -49.9 NC_005284.1 + 11143 0.68 0.891652
Target:  5'- aGAAAuUCGGCUUCAau-GCuGACGCAGc -3'
miRNA:   3'- gCUUU-GGCCGAAGUgcuUG-UUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 17720 0.66 0.955973
Target:  5'- aCGGcguUCGGCUgCACGucGCAgGCGCAGg -3'
miRNA:   3'- -GCUuu-GGCCGAaGUGCu-UGU-UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 38980 0.66 0.946904
Target:  5'- uGAuccGCgGGCUgCGCGcuGGCGACGCAa -3'
miRNA:   3'- gCUu--UGgCCGAaGUGC--UUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 16228 0.66 0.946904
Target:  5'- -cAGGCCGGCcUCgcggggacgGCGAACAACgGCAc -3'
miRNA:   3'- gcUUUGGCCGaAG---------UGCUUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 16685 0.66 0.946904
Target:  5'- uGAGGCCGGCgUCggcgugccgcugACGucCGACGCGc -3'
miRNA:   3'- gCUUUGGCCGaAG------------UGCuuGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 6701 0.66 0.941938
Target:  5'- aCGAAggGCaaGGCUgauUCGcCGAACAACGCGu -3'
miRNA:   3'- -GCUU--UGg-CCGA---AGU-GCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 50655 0.66 0.941938
Target:  5'- aGuguGCCGaGaCaUCGCGGACGugGCGGa -3'
miRNA:   3'- gCuu-UGGC-C-GaAGUGCUUGUugCGUC- -5'
24905 3' -49.9 NC_005284.1 + 14055 0.67 0.93113
Target:  5'- gCGGcaGGCUGGCgucaUCGCGAACGAgUGguGg -3'
miRNA:   3'- -GCU--UUGGCCGa---AGUGCUUGUU-GCguC- -5'
24905 3' -49.9 NC_005284.1 + 35971 0.67 0.925283
Target:  5'- uGAuGCUcGCUUCGCGAACAAUcaGCGu -3'
miRNA:   3'- gCUuUGGcCGAAGUGCUUGUUG--CGUc -5'
24905 3' -49.9 NC_005284.1 + 29205 0.67 0.919142
Target:  5'- aCGugcGuuGGCUUCACGucuGCGACGUu- -3'
miRNA:   3'- -GCuu-UggCCGAAGUGCu--UGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 10109 0.67 0.912705
Target:  5'- uGAAGaCGGCgaccgaaagCGCGGcgACGGCGCAGa -3'
miRNA:   3'- gCUUUgGCCGaa-------GUGCU--UGUUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 2509 0.67 0.908703
Target:  5'- gCGAAgcaacACCGGCUguaCACGGuCAuccauucucagccaaACGCAGa -3'
miRNA:   3'- -GCUU-----UGGCCGAa--GUGCUuGU---------------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 21915 0.68 0.898957
Target:  5'- gCGucGCCGGCg--ACGAuCAGCGCGa -3'
miRNA:   3'- -GCuuUGGCCGaagUGCUuGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 4779 1.09 0.004036
Target:  5'- uCGAAACCGGCUUCACGAACAACGCAGc -3'
miRNA:   3'- -GCUUUGGCCGAAGUGCUUGUUGCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.