miRNA display CGI


Results 21 - 40 of 58 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 3' -49.9 NC_005284.1 + 29205 0.67 0.919142
Target:  5'- aCGugcGuuGGCUUCACGucuGCGACGUu- -3'
miRNA:   3'- -GCuu-UggCCGAAGUGCu--UGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 47300 0.67 0.919142
Target:  5'- aGAGcACCGGCUcgagCACGcccuGC-ACGCGGu -3'
miRNA:   3'- gCUU-UGGCCGAa---GUGCu---UGuUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 39114 0.67 0.912705
Target:  5'- cCGAccuACUGGaucacuUUCACGGACGAUGCGu -3'
miRNA:   3'- -GCUu--UGGCCg-----AAGUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 45648 0.67 0.912705
Target:  5'- uCGAuAGCCGaGUg-CGCGGGCGACGCGc -3'
miRNA:   3'- -GCU-UUGGC-CGaaGUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 10109 0.67 0.912705
Target:  5'- uGAAGaCGGCgaccgaaagCGCGGcgACGGCGCAGa -3'
miRNA:   3'- gCUUUgGCCGaa-------GUGCU--UGUUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 2509 0.67 0.908703
Target:  5'- gCGAAgcaacACCGGCUguaCACGGuCAuccauucucagccaaACGCAGa -3'
miRNA:   3'- -GCUU-----UGGCCGAa--GUGCUuGU---------------UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 21915 0.68 0.898957
Target:  5'- gCGucGCCGGCg--ACGAuCAGCGCGa -3'
miRNA:   3'- -GCuuUGGCCGaagUGCUuGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 33884 0.68 0.898957
Target:  5'- gCGu-GCgGGCgaUUACGAACGGCGCGa -3'
miRNA:   3'- -GCuuUGgCCGa-AGUGCUUGUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 11143 0.68 0.891652
Target:  5'- aGAAAuUCGGCUUCAau-GCuGACGCAGc -3'
miRNA:   3'- gCUUU-GGCCGAAGUgcuUG-UUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 49386 0.68 0.884065
Target:  5'- -cGAGCUGGCgcgccgCACGGGCAA-GCAGc -3'
miRNA:   3'- gcUUUGGCCGaa----GUGCUUGUUgCGUC- -5'
24905 3' -49.9 NC_005284.1 + 40265 0.68 0.868071
Target:  5'- gGAcGCCGGaguuggUCGCGAcgcACGugGCGGu -3'
miRNA:   3'- gCUuUGGCCga----AGUGCU---UGUugCGUC- -5'
24905 3' -49.9 NC_005284.1 + 43480 0.69 0.859677
Target:  5'- aGAuccGACCGGCUacugUCGCGcuuuucCAGCGCAu -3'
miRNA:   3'- gCU---UUGGCCGA----AGUGCuu----GUUGCGUc -5'
24905 3' -49.9 NC_005284.1 + 12216 0.69 0.851029
Target:  5'- gGGGACCgGGCacgucCACGAGCGACaGCAu -3'
miRNA:   3'- gCUUUGG-CCGaa---GUGCUUGUUG-CGUc -5'
24905 3' -49.9 NC_005284.1 + 10904 0.69 0.851029
Target:  5'- aCGAAGCgCGGaCgaagggCGCGAAUgauGCGCAGg -3'
miRNA:   3'- -GCUUUG-GCC-Gaa----GUGCUUGu--UGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 9993 0.69 0.851029
Target:  5'- cCGcuGCUGcGCgagCGCGAGCGACGCu- -3'
miRNA:   3'- -GCuuUGGC-CGaa-GUGCUUGUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 45166 0.69 0.842136
Target:  5'- aCGgcGCuCGGCaacUUCACGAGC-GCGUAGc -3'
miRNA:   3'- -GCuuUG-GCCG---AAGUGCUUGuUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 4847 0.7 0.814083
Target:  5'- uGAAGCCGGUUUCgACGGuguacuCGAUGCu- -3'
miRNA:   3'- gCUUUGGCCGAAG-UGCUu-----GUUGCGuc -5'
24905 3' -49.9 NC_005284.1 + 12881 0.7 0.814083
Target:  5'- aCGgcGCCGuCUaCACGAugACGGCGCAGu -3'
miRNA:   3'- -GCuuUGGCcGAaGUGCU--UGUUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 43360 0.7 0.814083
Target:  5'- cCGAcAGgCGGuUUUCGCGAuCGACGCAGc -3'
miRNA:   3'- -GCU-UUgGCC-GAAGUGCUuGUUGCGUC- -5'
24905 3' -49.9 NC_005284.1 + 16753 0.7 0.804309
Target:  5'- cCGAcGCCGGCcUCACGcucGACGGC-CGGa -3'
miRNA:   3'- -GCUuUGGCCGaAGUGC---UUGUUGcGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.