Results 21 - 40 of 62 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24905 | 5' | -52.4 | NC_005284.1 | + | 38806 | 0.67 | 0.810306 |
Target: 5'- uGCCGuccGGCGCcauGCAGcgcauuGAGCCGGCa-- -3' miRNA: 3'- -CGGCuu-CCGCG---UGUC------UUUGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 12242 | 0.67 | 0.810306 |
Target: 5'- aGCCGuAGGCGUuc--GAGCCGACa-- -3' miRNA: 3'- -CGGCuUCCGCGugucUUUGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 535 | 0.67 | 0.810306 |
Target: 5'- cGCCGAccAGGCGCu-----GCCGGCUc- -3' miRNA: 3'- -CGGCU--UCCGCGugucuuUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 35363 | 0.67 | 0.819845 |
Target: 5'- cGUCGAcuguaGCGCAUGGAcGCCGACa-- -3' miRNA: 3'- -CGGCUuc---CGCGUGUCUuUGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 1260 | 0.67 | 0.780562 |
Target: 5'- aCUGcGGGCGCGaacaucgAGggGCCGuGCUUCg -3' miRNA: 3'- cGGCuUCCGCGUg------UCuuUGGC-UGAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 12130 | 0.67 | 0.819845 |
Target: 5'- uGCCGucGGCGCgcucggugguGCGGcAAGCgCGGCUgUCg -3' miRNA: 3'- -CGGCuuCCGCG----------UGUC-UUUG-GCUGA-AG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 43468 | 0.67 | 0.819845 |
Target: 5'- aGCUGu-GGCGCA-AGAuccGACCGGCUa- -3' miRNA: 3'- -CGGCuuCCGCGUgUCU---UUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 31567 | 0.67 | 0.780562 |
Target: 5'- uGCCG-AGGCGCGCA--AugCGcGCUUUu -3' miRNA: 3'- -CGGCuUCCGCGUGUcuUugGC-UGAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 46576 | 0.67 | 0.810306 |
Target: 5'- uGCCGAGcauggcGGCGCAguGGGcaacGCCGAacgUCc -3' miRNA: 3'- -CGGCUU------CCGCGUguCUU----UGGCUga-AG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 26546 | 0.67 | 0.800571 |
Target: 5'- cCCGuuuuGGGCGgGCAGuagguGGCCGGCg-- -3' miRNA: 3'- cGGCu---UCCGCgUGUCu----UUGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 33477 | 0.67 | 0.790653 |
Target: 5'- cGCCGucGGCcgGCGCuGcuGCCGACa-- -3' miRNA: 3'- -CGGCuuCCG--CGUGuCuuUGGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 10764 | 0.67 | 0.790653 |
Target: 5'- cGCCGAGGGCGUuCGGcugcuuuCUGACg-- -3' miRNA: 3'- -CGGCUUCCGCGuGUCuuu----GGCUGaag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 32134 | 0.67 | 0.800571 |
Target: 5'- aGCCGAAGuacaGCGUGCAGGcuuacgAGCCGAg-UCu -3' miRNA: 3'- -CGGCUUC----CGCGUGUCU------UUGGCUgaAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 27597 | 0.67 | 0.819845 |
Target: 5'- gGCCGAGGGCaaaGCGCc---GCCGAUUa- -3' miRNA: 3'- -CGGCUUCCG---CGUGucuuUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 34848 | 0.68 | 0.749374 |
Target: 5'- cGUCGcacAGGCGCACGauuGGGAUCGGCUc- -3' miRNA: 3'- -CGGCu--UCCGCGUGU---CUUUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 49051 | 0.68 | 0.749374 |
Target: 5'- uGCCGAcuggcacaAGaGCGCGCAGGGugucACUGACcgCg -3' miRNA: 3'- -CGGCU--------UC-CGCGUGUCUU----UGGCUGaaG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 21282 | 0.68 | 0.749374 |
Target: 5'- aGCCGGGcGUGCACGucaGGACCGGCUcCg -3' miRNA: 3'- -CGGCUUcCGCGUGUc--UUUGGCUGAaG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 40746 | 0.69 | 0.717066 |
Target: 5'- cGCUGAucGGGUGCAUGcGAuuuuGGCCGACUg- -3' miRNA: 3'- -CGGCU--UCCGCGUGU-CU----UUGGCUGAag -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 47851 | 0.69 | 0.695069 |
Target: 5'- cGCgGAAaGCGCACAGGAggccACCGAaugagUUUCg -3' miRNA: 3'- -CGgCUUcCGCGUGUCUU----UGGCU-----GAAG- -5' |
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24905 | 5' | -52.4 | NC_005284.1 | + | 11560 | 0.69 | 0.695069 |
Target: 5'- gGCUGAAGGaGCGCAGugcgcAGAUCGACg-- -3' miRNA: 3'- -CGGCUUCCgCGUGUC-----UUUGGCUGaag -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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