miRNA display CGI


Results 21 - 40 of 62 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24905 5' -52.4 NC_005284.1 + 17369 0.67 0.819845
Target:  5'- uCCGAcgggaaGGGCgGCA-AGGAGCCGuGCUUCa -3'
miRNA:   3'- cGGCU------UCCG-CGUgUCUUUGGC-UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 12130 0.67 0.819845
Target:  5'- uGCCGucGGCGCgcucggugguGCGGcAAGCgCGGCUgUCg -3'
miRNA:   3'- -CGGCuuCCGCG----------UGUC-UUUG-GCUGA-AG- -5'
24905 5' -52.4 NC_005284.1 + 43468 0.67 0.819845
Target:  5'- aGCUGu-GGCGCA-AGAuccGACCGGCUa- -3'
miRNA:   3'- -CGGCuuCCGCGUgUCU---UUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 35363 0.67 0.819845
Target:  5'- cGUCGAcuguaGCGCAUGGAcGCCGACa-- -3'
miRNA:   3'- -CGGCUuc---CGCGUGUCUuUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 46576 0.67 0.810306
Target:  5'- uGCCGAGcauggcGGCGCAguGGGcaacGCCGAacgUCc -3'
miRNA:   3'- -CGGCUU------CCGCGUguCUU----UGGCUga-AG- -5'
24905 5' -52.4 NC_005284.1 + 535 0.67 0.810306
Target:  5'- cGCCGAccAGGCGCu-----GCCGGCUc- -3'
miRNA:   3'- -CGGCU--UCCGCGugucuuUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 38806 0.67 0.810306
Target:  5'- uGCCGuccGGCGCcauGCAGcgcauuGAGCCGGCa-- -3'
miRNA:   3'- -CGGCuu-CCGCG---UGUC------UUUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 12242 0.67 0.810306
Target:  5'- aGCCGuAGGCGUuc--GAGCCGACa-- -3'
miRNA:   3'- -CGGCuUCCGCGugucUUUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 32134 0.67 0.800571
Target:  5'- aGCCGAAGuacaGCGUGCAGGcuuacgAGCCGAg-UCu -3'
miRNA:   3'- -CGGCUUC----CGCGUGUCU------UUGGCUgaAG- -5'
24905 5' -52.4 NC_005284.1 + 26546 0.67 0.800571
Target:  5'- cCCGuuuuGGGCGgGCAGuagguGGCCGGCg-- -3'
miRNA:   3'- cGGCu---UCCGCgUGUCu----UUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 10764 0.67 0.790653
Target:  5'- cGCCGAGGGCGUuCGGcugcuuuCUGACg-- -3'
miRNA:   3'- -CGGCUUCCGCGuGUCuuu----GGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 33477 0.67 0.790653
Target:  5'- cGCCGucGGCcgGCGCuGcuGCCGACa-- -3'
miRNA:   3'- -CGGCuuCCG--CGUGuCuuUGGCUGaag -5'
24905 5' -52.4 NC_005284.1 + 1260 0.67 0.780562
Target:  5'- aCUGcGGGCGCGaacaucgAGggGCCGuGCUUCg -3'
miRNA:   3'- cGGCuUCCGCGUg------UCuuUGGC-UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 31567 0.67 0.780562
Target:  5'- uGCCG-AGGCGCGCA--AugCGcGCUUUu -3'
miRNA:   3'- -CGGCuUCCGCGUGUcuUugGC-UGAAG- -5'
24905 5' -52.4 NC_005284.1 + 21282 0.68 0.749374
Target:  5'- aGCCGGGcGUGCACGucaGGACCGGCUcCg -3'
miRNA:   3'- -CGGCUUcCGCGUGUc--UUUGGCUGAaG- -5'
24905 5' -52.4 NC_005284.1 + 49051 0.68 0.749374
Target:  5'- uGCCGAcuggcacaAGaGCGCGCAGGGugucACUGACcgCg -3'
miRNA:   3'- -CGGCU--------UC-CGCGUGUCUU----UGGCUGaaG- -5'
24905 5' -52.4 NC_005284.1 + 34848 0.68 0.749374
Target:  5'- cGUCGcacAGGCGCACGauuGGGAUCGGCUc- -3'
miRNA:   3'- -CGGCu--UCCGCGUGU---CUUUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 1813 0.69 0.717066
Target:  5'- uGCuCGAAacGGaugGCGCGGAGAUCGACUaUCg -3'
miRNA:   3'- -CG-GCUU--CCg--CGUGUCUUUGGCUGA-AG- -5'
24905 5' -52.4 NC_005284.1 + 40746 0.69 0.717066
Target:  5'- cGCUGAucGGGUGCAUGcGAuuuuGGCCGACUg- -3'
miRNA:   3'- -CGGCU--UCCGCGUGU-CU----UUGGCUGAag -5'
24905 5' -52.4 NC_005284.1 + 9748 0.69 0.706105
Target:  5'- uGCCGAAGcGCGgGCGGucGAGgCGACggCg -3'
miRNA:   3'- -CGGCUUC-CGCgUGUC--UUUgGCUGaaG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.