Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24906 | 5' | -51 | NC_005284.1 | + | 40019 | 0.7 | 0.763396 |
Target: 5'- cGACCG--UGUCGGUCGagUgGCUCGAa -3' miRNA: 3'- -CUGGUuuGCGGCUAGCaaAgCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 24806 | 0.7 | 0.731451 |
Target: 5'- gGGCCGaaGACGCaCGGgcgUCGUUUCGCccuUCGGc -3' miRNA: 3'- -CUGGU--UUGCG-GCU---AGCAAAGCG---AGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 38651 | 0.7 | 0.720577 |
Target: 5'- cGGCCGAACgGCCG-UC---UCGCUCGGg -3' miRNA: 3'- -CUGGUUUG-CGGCuAGcaaAGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 51559 | 0.72 | 0.620007 |
Target: 5'- uGACCAaAGCGCgCGAUCaccgcccaUCGCUCGAc -3' miRNA: 3'- -CUGGU-UUGCG-GCUAGcaa-----AGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 7445 | 0.68 | 0.858922 |
Target: 5'- --aCGAACGCCaGAUCGgc-CGCgUCGAg -3' miRNA: 3'- cugGUUUGCGG-CUAGCaaaGCG-AGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 35604 | 0.67 | 0.875354 |
Target: 5'- cGACCGcgacACGggaaucgcucuUCGAcggcuUCGUUUCGCUCGAa -3' miRNA: 3'- -CUGGUu---UGC-----------GGCU-----AGCAAAGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 9628 | 0.67 | 0.890731 |
Target: 5'- uGCCu-GCGCCGccUCGUgUUGCUUGAu -3' miRNA: 3'- cUGGuuUGCGGCu-AGCAaAGCGAGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 36062 | 0.67 | 0.890731 |
Target: 5'- gGAUCGGaucACGCUGAUUG-UUCGCgaagCGAg -3' miRNA: 3'- -CUGGUU---UGCGGCUAGCaAAGCGa---GCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 21997 | 0.67 | 0.890731 |
Target: 5'- cGAUCucGCGCUGAUCG--UCGCcggCGAc -3' miRNA: 3'- -CUGGuuUGCGGCUAGCaaAGCGa--GCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 8835 | 0.66 | 0.902935 |
Target: 5'- cGCCGAACGCCGcugcggcggcuugugCGUaUUCGCggaUCGAa -3' miRNA: 3'- cUGGUUUGCGGCua-------------GCA-AAGCG---AGCU- -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 35867 | 0.66 | 0.924278 |
Target: 5'- -uUCAAGCGCCGccUGUUUCaGCUCu- -3' miRNA: 3'- cuGGUUUGCGGCuaGCAAAG-CGAGcu -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 8668 | 0.66 | 0.924278 |
Target: 5'- aGACCGcgcauGCGgCGGUCGUaUUCGgUCGu -3' miRNA: 3'- -CUGGUu----UGCgGCUAGCA-AAGCgAGCu -5' |
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24906 | 5' | -51 | NC_005284.1 | + | 21612 | 0.74 | 0.498741 |
Target: 5'- aGCCGAuguGCGCCGAUCagg-UGCUCGAc -3' miRNA: 3'- cUGGUU---UGCGGCUAGcaaaGCGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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