miRNA display CGI


Results 1 - 20 of 22 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24907 3' -48.4 NC_005284.1 + 38777 0.66 0.984436
Target:  5'- ---cCGGCagCCGA-UACGUCcAUCGa -3'
miRNA:   3'- guuaGCCGaaGGCUaAUGCAGcUAGC- -5'
24907 3' -48.4 NC_005284.1 + 23228 0.66 0.982324
Target:  5'- aCGAUCGGUgcccCUGAaUACGUCaacuuGAUCGc -3'
miRNA:   3'- -GUUAGCCGaa--GGCUaAUGCAG-----CUAGC- -5'
24907 3' -48.4 NC_005284.1 + 11669 0.66 0.980004
Target:  5'- --cUCGGCcgcguagucgCCGAgcuccGCGUCGAUCu -3'
miRNA:   3'- guuAGCCGaa--------GGCUaa---UGCAGCUAGc -5'
24907 3' -48.4 NC_005284.1 + 10580 0.66 0.980004
Target:  5'- uGAUCGGCaUCCGAgaccaccgACGgCGcAUCGc -3'
miRNA:   3'- gUUAGCCGaAGGCUaa------UGCaGC-UAGC- -5'
24907 3' -48.4 NC_005284.1 + 37924 0.66 0.977464
Target:  5'- gGGUCGGCUUCgCGcuaugUGCGcUCGGagUCGu -3'
miRNA:   3'- gUUAGCCGAAG-GCua---AUGC-AGCU--AGC- -5'
24907 3' -48.4 NC_005284.1 + 4254 0.67 0.971685
Target:  5'- -cGUCGaGCagCCGAUUcACGUCGuUCGc -3'
miRNA:   3'- guUAGC-CGaaGGCUAA-UGCAGCuAGC- -5'
24907 3' -48.4 NC_005284.1 + 35151 0.67 0.964908
Target:  5'- cCGGUCGGC-UCCGuugUAUGccgugugCGAUCGc -3'
miRNA:   3'- -GUUAGCCGaAGGCua-AUGCa------GCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 7489 0.68 0.948112
Target:  5'- --cUCGGCUUgcCCGAUccggGCGaauucUCGGUCGa -3'
miRNA:   3'- guuAGCCGAA--GGCUAa---UGC-----AGCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 18328 0.68 0.948112
Target:  5'- ---gCGGCUgcaCCGAUgGCGgaaCGAUCGu -3'
miRNA:   3'- guuaGCCGAa--GGCUAaUGCa--GCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 15351 0.68 0.943201
Target:  5'- --cUCGGCgugcaggCCGAUgGC-UCGAUCGg -3'
miRNA:   3'- guuAGCCGaa-----GGCUAaUGcAGCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 5144 0.69 0.926701
Target:  5'- gGAUCGucCUgaaUCCGAUcgacuggGCGUCGAUCGa -3'
miRNA:   3'- gUUAGCc-GA---AGGCUAa------UGCAGCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 52506 0.69 0.907528
Target:  5'- -uGUCGGCUUCaCGAUUuucgaaacagAUGUCGAcuagUCGc -3'
miRNA:   3'- guUAGCCGAAG-GCUAA----------UGCAGCU----AGC- -5'
24907 3' -48.4 NC_005284.1 + 15349 0.7 0.885725
Target:  5'- uCGGUCGGCUgugCCGA-UGCGcCGGgaugCGa -3'
miRNA:   3'- -GUUAGCCGAa--GGCUaAUGCaGCUa---GC- -5'
24907 3' -48.4 NC_005284.1 + 5958 0.7 0.877892
Target:  5'- gUAAUCGGaagCCGAUUGCGUUGcggCGc -3'
miRNA:   3'- -GUUAGCCgaaGGCUAAUGCAGCua-GC- -5'
24907 3' -48.4 NC_005284.1 + 39750 0.7 0.865633
Target:  5'- aCGAUCGGCUccuagaccuugagcCCGAUcgaccguagaaagagGCGUCGGUCGu -3'
miRNA:   3'- -GUUAGCCGAa-------------GGCUAa--------------UGCAGCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 50473 0.71 0.843909
Target:  5'- ---aCGGUUcCCGGUUGCGUCGcgUGu -3'
miRNA:   3'- guuaGCCGAaGGCUAAUGCAGCuaGC- -5'
24907 3' -48.4 NC_005284.1 + 6794 0.72 0.796138
Target:  5'- ---cCGGCgUuuGA-UGCGUCGAUCGg -3'
miRNA:   3'- guuaGCCGaAggCUaAUGCAGCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 21620 0.72 0.785984
Target:  5'- -cGUCGGCaagCCGAUgUGCGcCGAUCa -3'
miRNA:   3'- guUAGCCGaa-GGCUA-AUGCaGCUAGc -5'
24907 3' -48.4 NC_005284.1 + 19019 0.73 0.743773
Target:  5'- -cAUCGGCggggUGAUUAgGUCGAUCGg -3'
miRNA:   3'- guUAGCCGaag-GCUAAUgCAGCUAGC- -5'
24907 3' -48.4 NC_005284.1 + 7156 0.75 0.642921
Target:  5'- aAGUCGGCaagCCGAUcgGCGUCGGUg- -3'
miRNA:   3'- gUUAGCCGaa-GGCUAa-UGCAGCUAgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.