Results 21 - 40 of 64 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24907 | 5' | -57.2 | NC_005284.1 | + | 33112 | 0.67 | 0.579438 |
Target: 5'- aGCGGGCGAUGCUGccucUGCgugaacggguugagGGGCGGc -3' miRNA: 3'- gCGCUUGCUGCGGCucu-ACG--------------UCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 31598 | 0.66 | 0.614655 |
Target: 5'- uCGCucACGAuuUGCUcccuuGGGUGCGGGCGGc -3' miRNA: 3'- -GCGcuUGCU--GCGGc----UCUACGUCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 31339 | 0.66 | 0.646813 |
Target: 5'- gGCGAGCGACGCgcAGAacacgcgcUGUcGGUGGc -3' miRNA: 3'- gCGCUUGCUGCGgcUCU--------ACGuCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 30891 | 0.76 | 0.170076 |
Target: 5'- uCGCGcAGCGACcgagcccaGUCGGGAUGCAucgGGCGGg -3' miRNA: 3'- -GCGC-UUGCUG--------CGGCUCUACGU---CCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 30660 | 0.66 | 0.636094 |
Target: 5'- uGCGuGCGGcCGUCGAGcagccgGCcGGCGGc -3' miRNA: 3'- gCGCuUGCU-GCGGCUCua----CGuCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 30421 | 0.69 | 0.489394 |
Target: 5'- cCGCGugcGCGACGgCGAGGUGCuguuucGCGa -3' miRNA: 3'- -GCGCu--UGCUGCgGCUCUACGuc----CGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 30337 | 0.73 | 0.283902 |
Target: 5'- cCGCGGcuACGACGuuGAGAUcgAGGCGa -3' miRNA: 3'- -GCGCU--UGCUGCggCUCUAcgUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 29873 | 0.72 | 0.320454 |
Target: 5'- uCGCGAugguCGGCGCCGGcGUGUuccaAGGCGa -3' miRNA: 3'- -GCGCUu---GCUGCGGCUcUACG----UCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 28616 | 0.69 | 0.469584 |
Target: 5'- gGCGAACG-UGCCGGGuAUGacgugaAGGCGc -3' miRNA: 3'- gCGCUUGCuGCGGCUC-UACg-----UCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 25922 | 0.66 | 0.636094 |
Target: 5'- gCGCGccgcuuaGAUGCCGuucaagGUAGGCGGg -3' miRNA: 3'- -GCGCuug----CUGCGGCucua--CGUCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 23452 | 0.68 | 0.530119 |
Target: 5'- gGCuacauCGACacacCCGAGAaGCAGGCGGc -3' miRNA: 3'- gCGcuu--GCUGc---GGCUCUaCGUCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 23082 | 0.7 | 0.394808 |
Target: 5'- gGCG-GCGACGCUGGuagcauGUGgGGGCGGa -3' miRNA: 3'- gCGCuUGCUGCGGCUc-----UACgUCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 22217 | 0.67 | 0.560401 |
Target: 5'- cCGCGcuuuccgaagcacGACuguuACGUCGAGGUguucGCGGGCGGg -3' miRNA: 3'- -GCGC-------------UUGc---UGCGGCUCUA----CGUCCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 21660 | 0.67 | 0.572017 |
Target: 5'- cCGCGcACGAUGCCGcc--GCGucGGCGGu -3' miRNA: 3'- -GCGCuUGCUGCGGCucuaCGU--CCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 21630 | 0.7 | 0.431249 |
Target: 5'- cCGCGcuCGACGCCGAGcaGCGuGCGa -3' miRNA: 3'- -GCGCuuGCUGCGGCUCuaCGUcCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 21347 | 0.66 | 0.614655 |
Target: 5'- gGCGcGCGGC-CCGAuguUGUAGGCGa -3' miRNA: 3'- gCGCuUGCUGcGGCUcu-ACGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19462 | 0.72 | 0.31287 |
Target: 5'- uGCGGcaGGCGCUGAucGGUGCGGGCuGGa -3' miRNA: 3'- gCGCUugCUGCGGCU--CUACGUCCG-CC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19418 | 0.66 | 0.614655 |
Target: 5'- nGUGAucgGCG-CGCCGuucguuGUGCAaGGCGGg -3' miRNA: 3'- gCGCU---UGCuGCGGCuc----UACGU-CCGCC- -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19379 | 0.7 | 0.41187 |
Target: 5'- uGCGaAGCGAuuCGCCGuGAucgacgagggcggUGCAGGCGu -3' miRNA: 3'- gCGC-UUGCU--GCGGCuCU-------------ACGUCCGCc -5' |
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24907 | 5' | -57.2 | NC_005284.1 | + | 19028 | 0.71 | 0.360419 |
Target: 5'- gGCG-GCGAuCGCCGAGG-GCGauauGGCGGu -3' miRNA: 3'- gCGCuUGCU-GCGGCUCUaCGU----CCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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